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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF511
Library VH
(Link to library)
Clone ID VHF511
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15704-1
Original site URL
Representative seq. ID VHF511P
(Link to Original site)
Representative DNA sequence 
>VHF511 (VHF511Q) /CSM/VH/VHF5-A/VHF511Q.Seq.d/
AAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATTAAAGTACAGTAG
TAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAAAACAACAACAAC
AACAACGACAGCTACATCAGCATCAACACCAACACCATCAACATTAAATGATAAATCGAC
TATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTTTAAATATACAAA
TAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAATCCAGTTGATTG
GTTGCCATGGGGAGAAGANGCTTTTAAAATTGCAAGAGATAATGATAAATTAATATTTCT
TATTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGAATGTTTTGAAAA
TGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAATTGACCGTGAAGA
AAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGANAXXXXXXXXXXCAATTA
AATCAATTGAATTCATAAAAACCNATTTATACGATAGTGTTGGTGATGATAATGATTNCG
ATGATGAAGACNATAAACTTAATAATTGTAGATTAATTAGAAATTATAAAGATGGTCCAT
CGAAAATTCACGCATTCACAGATGATTATTCATTTTTGATTCAAGCATTATTGGATTTAT
ATCAAGTTACATTTGATTATAAACATTTGGAATGGGCAATGAAATTACAAAANCAACAAG
ATAATTTATTCTATGATTTAGAGAATGGTGGTTATTAGTCAACATCTGGTTTAGATAAAT
CAATTCTATNTAGAATGAAAGAAGAACATGATGGTGCTGAACCATCACTTCAATCAATTA
GTGTTTCAAATTTATTGGGACTTTACTCAATAACTTATAATGAAGCNTATAAAGAGAAAG
CAAAGAAAACNTTGGAGAATTGTTCATTATATTTAGAAAAGGCACCACTTGTTTTCCCAC
AAATGGTTTGTTCATTATATTTATACTTAAATTCAATCAATACAATCATTCTATCAACTA
ATAGTAATGATAATCAACAAAAACAACAATTACTATCAATTCTTGATGAAATTCATTCAA
ATTATATACCAATTAGATTAATTCTATTAAATGATCATTCAAATAATTCAATTACACAAT
TNTTTGAAAAGAGTACTTCAAATTTAAATTTATCACTTTCAACNCCAGTTTATGATAAAG
ACTACATTTTCATTATGTAATCCAAAGGGTTGCNCNATTTCAACNAATCNATTACNACAA
ATTAAGATCAAATTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
KLLKSTTSNFILFNKLKYSSNNQDFEKRFFKMSDNKTTTTTTTATSASTPTPSTLNDKST
IKTTPITDNNNNNENFKYTNKLINEKSPYLLKHAHNPVDWLPWGEXAFKIARDNDKLIFL
IVGYMACHWCNVMERECFENVEIAKVMNEYCVNIKIDREERPDIDKIYMTYLTX---

---IKSIEFIKTXLYDSVGDDNDXDDEDXKLNNCRLIRNYKDGPSKIHAFTDDYSFLIQA
LLDLYQVTFDYKHLEWAMKLQXQQDNLFYDLENGGY*stsgldksilxrmkeehdgaeps
lqsisvsnllglysityneaykekakktlencslylekaplvfpqmvcslylylnsinti
ilstnsndnqqkqqllsildeihsnyipirlillndhsnnsitqxfekstsnlnlslstp
vydkdyifim*skglxxfnxsittn*dqi
Translated Amino Acid sequence (All Frames) 
Frame A:
kvikinnikfyii**ikvq**qsrfrekif*nvr*qnnnnnndsyisintntinik**id
yknnsnnr******kf*iyk*ink*kitifiktrs*ss*lvamgrrxf*nckr***inis
ycwlygmslv*cygt*mf*kc*nc*sne*ilcky*n*p*rktry**dlydlfnr---

---qlnqlns*kpiytivlvmimixmmktinliivd*leiikmvhrkfthsqmiihf*fk
hywiyiklhliiniwngq*nykxnkiiysmi*rmvvisqhlv*inqfyxe*kknmmvlnh
hfnqlvfqiywdftq*limkxikrkqrkxwrivhyi*krhhlfshkwfvhyiyt*iqsiq
sfyqlivmiinknnnyyqflmkfiqiiyqld*fy*miiqiiqlhnxlkrvlqi*iyhfqx
qfmikttfslcnpkgcxistnxlxqikikf

Frame B:
KLLKSTTSNFILFNKLKYSSNNQDFEKRFFKMSDNKTTTTTTTATSASTPTPSTLNDKST
IKTTPITDNNNNNENFKYTNKLINEKSPYLLKHAHNPVDWLPWGEXAFKIARDNDKLIFL
IVGYMACHWCNVMERECFENVEIAKVMNEYCVNIKIDREERPDIDKIYMTYLTX---

---n*in*ihknxfir*cw****xr**rx*t**l*in*kl*rwsiensrihr*lfifdss
iigfissyi*l*tfgmgneitkxtr*fil*frewwllvniwfr*insx*nerrt*wc*ti
tsin*cfkfigtllnnl**sx*reskenxgelfiifrkgttcfptnglfiifilkfnqyn
hsin*****stkttitins**nsfklytn*insik*sfk*fnytix*keyfkfkfitfnx
sl**rlhfhyviqrvaxfqxixyxklrsnl

Frame C:
sy*nqqhqilyylin*stvvtikisrkdflkcqitkqqqqqrqlhqhqhqhhqh*minrl
*kqlq*qiiiiimkilniqin**mknhhiy*ntliiqligchgekxllklqeimin*yfl
llviwhvigvmlwnvnvlkmlkllk**mniv*ilkltvkkdqilirfi*pi*px---

---IKSIEFIKTXLYDSVGDDNDXDDEDXKLNNCRLIRNYKDGPSKIHAFTDDYSFLIQA
LLDLYQVTFDYKHLEWAMKLQXQQDNLFYDLENGGY*stsgldksilxrmkeehdgaeps
lqsisvsnllglysityneaykekakktlencslylekaplvfpqmvcslylylnsinti
ilstnsndnqqkqqllsildeihsnyipirlillndhsnnsitqxfekstsnlnlslstp
vydkdyifim*skglxxfnxsittn*dqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF511 (VHF511Q) /CSM/VH/VHF5-A/VHF511Q.Seq.d/                       1945   0.0
CHQ701 (CHQ701Q) /CSM/CH/CHQ7-A/CHQ701Q.Seq.d/                       1336   0.0
VHP812 (VHP812Q) /CSM/VH/VHP8-A/VHP812Q.Seq.d/                       1328   0.0
AHF763 (AHF763Q) /CSM/AH/AHF7-C/AHF763Q.Seq.d/                       1314   0.0
SHJ766 (SHJ766Q) /CSM/SH/SHJ7-C/SHJ766Q.Seq.d/                       1302   0.0
VHM532 (VHM532Q) /CSM/VH/VHM5-B/VHM532Q.Seq.d/                       1221   0.0
AHL888 (AHL888Q) /CSM/AH/AHL8-D/AHL888Q.Seq.d/                       1160   0.0
AHO650 (AHO650Q) /CSM/AH/AHO6-C/AHO650Q.Seq.d/                       1148   0.0
CHN762 (CHN762Q) /CSM/CH/CHN7-C/CHN762Q.Seq.d/                       1136   0.0
CHQ460 (CHQ460Q) /CSM/CH/CHQ4-C/CHQ460Q.Seq.d/                       1055   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439914) Dictyostelium discoideum cDNA clone:ddv42e03, 3' ...  1507   0.0    1
(BJ385448) Dictyostelium discoideum cDNA clone:ddc55b01, 3' ...  1253   0.0    2
(BJ446237) Dictyostelium discoideum cDNA clone:ddv62h04, 3' ...  1245   0.0    2
(BJ351288) Dictyostelium discoideum cDNA clone:dda42n15, 3' ...  1231   0.0    2
(BJ407753) Dictyostelium discoideum cDNA clone:dds43d17, 3' ...  1219   0.0    2
(BJ354851) Dictyostelium discoideum cDNA clone:dda54p22, 3' ...  1076   0.0    2
(BJ356499) Dictyostelium discoideum cDNA clone:dda60c14, 3' ...  1065   0.0    2
(BJ385326) Dictyostelium discoideum cDNA clone:ddc54h16, 3' ...  1013   0.0    2
(BJ384490) Dictyostelium discoideum cDNA clone:ddc49l15, 3' ...   771   0.0    4
(BJ444460) Dictyostelium discoideum cDNA clone:ddv56o07, 3' ...   611   0.0    3
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599_1972(AE013599|pid:none) Drosophila melanogaster chromos...   141   5e-32
AE015927_839(AE015927|pid:none) Clostridium tetani E88, complete...   140   1e-31
CP001100_1390(CP001100|pid:none) Chloroherpeton thalassium ATCC ...   139   2e-31
CP001083_1035(CP001083|pid:none) Clostridium botulinum Ba4 str. ...   138   4e-31
AE010299_3624(AE010299|pid:none) Methanosarcina acetivorans str....   138   5e-31
CP001336_3283(CP001336|pid:none) Desulfitobacterium hafniense DC...   137   9e-31
CP001275_498(CP001275|pid:none) Thermomicrobium roseum DSM 5159,...   137   1e-30
CP001098_1122(CP001098|pid:none) Halothermothrix orenii H 168, c...   137   1e-30
CP000103_344(CP000103|pid:none) Nitrosospira multiformis ATCC 25...   136   2e-30
CP000804_2908(CP000804|pid:none) Roseiflexus castenholzii DSM 13...   136   2e-30
protein update 2009. 7. 4
PSORT 

 psg: 0.87  gvh: 0.33  alm: 0.34  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: plasma membrane

>> prediction for VHF511 is cyt
5' end seq. ID VHF511F
5' end seq. 
>VHF511F.Seq
AAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATTAAAGTACAGTAG
TAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAAAACAACAACAAC
AACAACGACAGCTACATCAGCATCAACACCAACACCATCAACATTAAATGATAAATCGAC
TATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTTTAAATATACAAA
TAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAATCCAGTTGATTG
GTTGCCATGGGGAGAAGANGCTTTTAAAATTGCAAGAGATAATGATAAATTAATATTTCT
TATTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGAATGTTTTGAAAA
TGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAATTGACCGTGAAGA
AAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGANANNNNNNNNNN
Length of 5' end seq. 534
3' end seq. ID VHF511Z
3' end seq. 
>VHF511Z.Seq
NNNNNNNNNNCAATTAAATCAATTGAATTCATAAAAACCNATTTATACGATAGTGTTGGT
GATGATAATGATTNCGATGATGAAGACNATAAACTTAATAATTGTAGATTAATTAGAAAT
TATAAAGATGGTCCATCGAAAATTCACGCATTCACAGATGATTATTCATTTTTGATTCAA
GCATTATTGGATTTATATCAAGTTACATTTGATTATAAACATTTGGAATGGGCAATGAAA
TTACAAAANCAACAAGATAATTTATTCTATGATTTAGAGAATGGTGGTTATTAGTCAACA
TCTGGTTTAGATAAATCAATTCTATNTAGAATGAAAGAAGAACATGATGGTGCTGAACCA
TCACTTCAATCAATTAGTGTTTCAAATTTATTGGGACTTTACTCAATAACTTATAATGAA
GCNTATAAAGAGAAAGCAAAGAAAACNTTGGAGAATTGTTCATTATATTTAGAAAAGGCA
CCACTTGTTTTCCCACAAATGGTTTGTTCATTATATTTATACTTAAATTCAATCAATACA
ATCATTCTATCAACTAATAGTAATGATAATCAACAAAAACAACAATTACTATCAATTCTT
GATGAAATTCATTCAAATTATATACCAATTAGATTAATTCTATTAAATGATCATTCAAAT
AATTCAATTACACAATTNTTTGAAAAGAGTACTTCAAATTTAAATTTATCACTTTCAACN
CCAGTTTATGATAAAGACTACATTTTCATTATGTAATCCAAAGGGTTGCNCNATTTCAAC
NAATCNATTACNACAAATTAAGATCAAATTTA
Length of 3' end seq. 812
Connected seq. ID VHF511P
Connected seq. 
>VHF511P.Seq
AAAGTTATTAAAATCAACAACATCAAATTTTATATTATTTAATAAATTAAAGTACAGTAG
TAACAATCAAGATTTCGAGAAAAGATTTTTTAAAATGTCAGATAACAAAACAACAACAAC
AACAACGACAGCTACATCAGCATCAACACCAACACCATCAACATTAAATGATAAATCGAC
TATAAAAACAACTCCAATAACAGATAATAATAATAATAATGAAAATTTTAAATATACAAA
TAAATTAATAAATGAAAAATCACCATATTTATTAAAACACGCTCATAATCCAGTTGATTG
GTTGCCATGGGGAGAAGANGCTTTTAAAATTGCAAGAGATAATGATAAATTAATATTTCT
TATTGTTGGTTATATGGCATGTCATTGGTGTAATGTTATGGAACGTGAATGTTTTGAAAA
TGTTGAAATTGCTAAAGTAATGAATGAATATTGTGTAAATATTAAAATTGACCGTGAAGA
AAGACCAGATATTGATAAGATTTATATGACCTATTTAACCGANA----------CAATTA
AATCAATTGAATTCATAAAAACCNATTTATACGATAGTGTTGGTGATGATAATGATTNCG
ATGATGAAGACNATAAACTTAATAATTGTAGATTAATTAGAAATTATAAAGATGGTCCAT
CGAAAATTCACGCATTCACAGATGATTATTCATTTTTGATTCAAGCATTATTGGATTTAT
ATCAAGTTACATTTGATTATAAACATTTGGAATGGGCAATGAAATTACAAAANCAACAAG
ATAATTTATTCTATGATTTAGAGAATGGTGGTTATTAGTCAACATCTGGTTTAGATAAAT
CAATTCTATNTAGAATGAAAGAAGAACATGATGGTGCTGAACCATCACTTCAATCAATTA
GTGTTTCAAATTTATTGGGACTTTACTCAATAACTTATAATGAAGCNTATAAAGAGAAAG
CAAAGAAAACNTTGGAGAATTGTTCATTATATTTAGAAAAGGCACCACTTGTTTTCCCAC
AAATGGTTTGTTCATTATATTTATACTTAAATTCAATCAATACAATCATTCTATCAACTA
ATAGTAATGATAATCAACAAAAACAACAATTACTATCAATTCTTGATGAAATTCATTCAA
ATTATATACCAATTAGATTAATTCTATTAAATGATCATTCAAATAATTCAATTACACAAT
TNTTTGAAAAGAGTACTTCAAATTTAAATTTATCACTTTCAACNCCAGTTTATGATAAAG
ACTACATTTTCATTATGTAATCCAAAGGGTTGCNCNATTTCAACNAATCNATTACNACAA
ATTAAGATCAAATTTA
Length of connected seq. 1326
Full length Seq ID -
Full length Seq. -
Length of full length seq. -