>VHF507 (VHF507Q) /CSM/VH/VHF5-A/VHF507Q.Seq.d/
XXXXXXXXXXTACCAATCTTTCGAAATCAATCGAATATGTATCAAATCAGTATAGTAAAG
AATTGTATAATCTAATTGTATATCTATTANCCAAACCAGTTATAAACNTACCAAATATCG
ATGAAGTGGTGTTGATGATTAGTGGAAGACTTTTGCAAGAGAATAATTATCTTCATACNT
ACACTGATGACCTCGAGACTGAACTCTATAAAGAATATGAGAATGGTCGTNTCTTTAGAT
TGGTTACAAAGTTGGGTTTCATCAATGAACGTCCACTCTATGATATGGATCCACGTTGGT
CTGAANCTGGTGATAGGTATNTAATCAAATTGTTTCGTGACTACATCTTTCATCAAGTCT
ACGATGATGGTACTCCTGTGCTCGACTTTTACCATGTTGTTGAAACCNTCAATAAANTGG
ATTGTGGTGTCGATGAAAAAATACTTTTAATGTCTAGAGATGAACNATCACTTTTGGTAG
TCAGTTATAAAGATTTAAAAAAATGTATAGACTNCTGCTTTTTCAGAATGGTNCNCTCAA
A

---TNLSKSIEYVSNQYSKELYNLIVYLLXKPVINXPNIDEVVLMISGRLLQENNYLHTY
TDDLETELYKEYENGRXFRLVTKLGFINERPLYDMDPRWSEXGDRYXIKLFRDYIFHQVY
DDGTPVLDFYHVVETXNKXDCGVDEKILLMSRDEXSLLVVSYKDLKKCIDXCFFRMVXS

Frame A:
---TNLSKSIEYVSNQYSKELYNLIVYLLXKPVINXPNIDEVVLMISGRLLQENNYLHTY
TDDLETELYKEYENGRXFRLVTKLGFINERPLYDMDPRWSEXGDRYXIKLFRDYIFHQVY
DDGTPVLDFYHVVETXNKXDCGVDEKILLMSRDEXSLLVVSYKDLKKCIDXCFFRMVXS


Frame B:
---pifrnqsnmyqisivkncii*lyiyxpnql*tyqismkwc**lvedfckriiifixt
lmtsrlnsiknmrmvvsldwlqswvssmnvhsmiwihvglxlvigx*sncfvttsfikst
mmvllcstftmllkpsixwivvsmkkyf*clemnxhfw*sviki*knv*txafsewxxq


Frame C:
---qsfeinriciksv**riv*sncisixqtsykxtkyr*sgvdd*wktfare*lssyxh
**prd*tl*ri*ewsxl*igykvgfhq*tstl*ygstlv*xw**vxnqivs*lhlssslr
*wyscarllpcc*nxq*xglwcr*kntfnv*r*titfgsql*rfkkmyrlllfqngxlk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF507 (VHF507Q) /CSM/VH/VHF5-A/VHF507Q.Seq.d/                        940   0.0
VHJ326 (VHJ326Q) /CSM/VH/VHJ3-B/VHJ326Q.Seq.d/                        916   0.0
AHG777 (AHG777Q) /CSM/AH/AHG7-D/AHG777Q.Seq.d/                        902   0.0
CFH392 (CFH392Q) /CSM/CF/CFH3-D/CFH392Q.Seq.d/                        896   0.0
CHO586 (CHO586Q) /CSM/CH/CHO5-D/CHO586Q.Seq.d/                        894   0.0
SHE679 (SHE679Q) /CSM/SH/SHE6-D/SHE679Q.Seq.d/                        876   0.0
CHP878 (CHP878Q) /CSM/CH/CHP8-D/CHP878Q.Seq.d/                        864   0.0
CHL362 (CHL362Q) /CSM/CH/CHL3-C/CHL362Q.Seq.d/                        829   0.0
AHB142 (AHB142Q) /CSM/AH/AHB1-B/AHB142Q.Seq.d/                        829   0.0
CHN279 (CHN279Q) /CSM/CH/CHN2-D/CHN279Q.Seq.d/                        791   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439950) Dictyostelium discoideum cDNA clone:ddv42m01, 3' ...   910   0.0    2
(BJ442241) Dictyostelium discoideum cDNA clone:ddv49d07, 3' ...   902   0.0    2
(BJ351868) Dictyostelium discoideum cDNA clone:dda44j19, 3' ...   902   0.0    1
(BJ373128) Dictyostelium discoideum cDNA clone:ddc15h23, 3' ...   894   0.0    2
(BJ385124) Dictyostelium discoideum cDNA clone:ddc51k21, 3' ...   894   0.0    1
(BJ406033) Dictyostelium discoideum cDNA clone:dds33m20, 3' ...   858   0.0    2
(BJ383684) Dictyostelium discoideum cDNA clone:ddc53l20, 3' ...   815   0.0    3
(BJ382411) Dictyostelium discoideum cDNA clone:ddc44l15, 3' ...   829   0.0    1
(BJ348449) Dictyostelium discoideum cDNA clone:dda33c11, 3' ...   829   0.0    1
(BJ409522) Dictyostelium discoideum cDNA clone:dds42l08, 3' ...   809   0.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128180_1(BC128180|pid:none) Homo sapiens PAN3 poly(A) specific...   162   4e-39
BC128179_1(BC128179|pid:none) Homo sapiens PAN3 poly(A) specific...   162   4e-39
(Q640Q5) RecName: Full=PAB-dependent poly(A)-specific ribonuclea...   162   4e-39
AK012409_1(AK012409|pid:none) Mus musculus 11 days embryo whole ...   162   4e-39
BX647740_1(BX647740|pid:none) Homo sapiens mRNA; cDNA DKFZp686K1...   162   4e-39
BC082547_1(BC082547|pid:none) Mus musculus PAN3 polyA specific r...   162   4e-39
(Q5T516) RecName: Full=PAB-dependent poly(A)-specific ribonuclea...   162   4e-39
BC086321_1(BC086321|pid:none) Mus musculus PAN3 polyA specific r...   162   4e-39
AB109552_1(AB109552|pid:none) Homo sapiens PAN3b mRNA for PABP1-...   160   3e-38
AE014296_588(AE014296|pid:none) Drosophila melanogaster chromoso...   158   1e-37

 psg: 0.60  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHF507 is cyt

>VHF507Z.Seq
NNNNNNNNNNTACCAATCTTTCGAAATCAATCGAATATGTATCAAATCAGTATAGTAAAG
AATTGTATAATCTAATTGTATATCTATTANCCAAACCAGTTATAAACNTACCAAATATCG
ATGAAGTGGTGTTGATGATTAGTGGAAGACTTTTGCAAGAGAATAATTATCTTCATACNT
ACACTGATGACCTCGAGACTGAACTCTATAAAGAATATGAGAATGGTCGTNTCTTTAGAT
TGGTTACAAAGTTGGGTTTCATCAATGAACGTCCACTCTATGATATGGATCCACGTTGGT
CTGAANCTGGTGATAGGTATNTAATCAAATTGTTTCGTGACTACATCTTTCATCAAGTCT
ACGATGATGGTACTCCTGTGCTCGACTTTTACCATGTTGTTGAAACCNTCAATAAANTGG
ATTGTGGTGTCGATGAAAAAATACTTTTAATGTCTAGAGATGAACNATCACTTTTGGTAG
TCAGTTATAAAGATTTAAAAAAATGTATAGACTNCTGCTTTTTCAGAATGGTNCNCTCAA
A