VHF479 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHF479
Library	VH (Link to library)
Clone ID	VHF479 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11426-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHF4-D/VHF479Q.Seq.d/
Representative seq. ID	VHF479P (Link to Original site)
Representative DNA sequence	>VHF479 (VHF479Q) /CSM/VH/VHF4-D/VHF479Q.Seq.d/ AATTTGCAATGATTTACCATTCCCAATTCTAGTTGCTCAATGTGTTAGTACTATCGATGG TATCGATAAGATGGCACTCAATTTCAGTGGTAGTGGTTTGAGTAGTAGTTCAGGTAGTAA TGGTAAAGGTGTTTCAAATCCTGTTAGATTACTAGGTGAACTAAGATTAGATCCTGGTGA ATATAAACCATTCCATTGGGAAGAGAATGTTGAAAATAAAAAGATTTCAATTAGACCAAT TACCAATGAAAAGAATCCTCAAGAATGGCGTTGGTCAGGTGGTTTCTTTGTTGATTCCAT TAGTGATTACGTTGTAAAGAGTAGAAATACCGAACGTCCTGATCACGATTCTCTCTTATT CCATGTGAATATCAAAGAGAAACAAGGTACTCATTTCATTAGAATTCCACTTTCAAGTAA AGAAAGTCCACCTTATATCATTCAAAATGATACTCAATTCAAAATCTCATTCTTCCAACG TGATTCACCAGAGAATATCGATTATATTGAACCAAAAGAAAAGCTTTGCTATGGTTGGGA TGAACCATCTGCAGAATATGTTCTCTCTGTCGCTGTAGAGGGTAAAACATTGAAAAAGCG TATCAATGTCAATAAGATTXXXXXXXXXXTTTAGCAATGGGTGGTATTGGTNTGGGTCGT GGTATTNTTCAAGGTATTACAGGTATCGTTACAAAACCAGTTGAAGGTGCAAAGAAAGGT GGTTTCGCAGGTTTTGCCAAAGGTTTAGCTCAAGGTGTTGTAGGTGTTGCAGTTAAACCA ACTACCGCCGTAATCGATTTAGCAANTAAAACAACNGAAGGTATTAAAAACNCTACAAAT CTTCAAAGTCAAGCAGAACGTGTTCGTCNTCCAAGATGCTTTTCTCATGATAACGTTTTA CGTCCATTCGATGAAGTTGAAAGTGAAGGTTGGTTCCTTTTGAAAACCGCTCACAAAGGT AAACATGCTTCTGATAGTTACATTTGGCATCATATCATCAATCAAGAATGTACCATCATC ATNTCTGATCATAGAATTATCTTATCAAAATCTAAAAAGAATTTCTTACATAGTTCTTTC ATCTTCCAAATTCCTTTCAAATTCATTAAATCAAATGAAATGGTAGATGATGGTGTTCTT TTAGAATTTGACCCACCTCAAAATCTTGGTTTATTAGATCGCGATGTTAAATNTAAAGTA ATTCCAGTCGATGATCTTAATGTAAACATGTTATTAAATATGAAATTATCTCANGCTTGA AAAAATTCCATGATAATAATCCAAATTTATCAAATTCTTCCTCTATTAAA
sequence update	2002.10.25
Translated Amino Acid sequence	ICNDLPFPILVAQCVSTIDGIDKMALNFSGSGLSSSSGSNGKGVSNPVRLLGELRLDPGE YKPFHWEENVENKKISIRPITNEKNPQEWRWSGGFFVDSISDYVVKSRNTERPDHDSLLF HVNIKEKQGTHFIRIPLSSKESPPYIIQNDTQFKISFFQRDSPENIDYIEPKEKLCYGWD EPSAEYVLSVAVEGKTLKKRINVNKI--- ---LAMGGIGXGRGIXQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDL AXKTTEGIKNXTNLQSQAERVRXPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSY IWHHIINQECTIIXSDHRIILSKSKKNFLHSSFIFQIPFKFIKSNEMVDDGVLLEFDPPQ NLGLLDRDVKXKVIPVDDLNVNMLLNMKLSXA*knsmiiiqiyqilpll
Translated Amino Acid sequence (All Frames)	Frame A: nlqftipnsscsmcyyrwyrdgtqfqwwfefrwrcfkscitrtkirsw itiplgreckkdfntnyqkessrmalvrwflcfh*lrckekyrtssrfsli pceyqretrysfhnstfkrkstlyhskysiqnlilptftreyrlytkrkallwlg ticricslcrcrgniekayqcqd--- ---fsngwywxgswyxsryyryryktsrckerwfrrfcqrfssrccrccstnyrrnrf sxnnxrykxyksskssrtcssskmlfsrftsirskrlvpfenrsqrtcfl hlasyhqsrmyhhhxsnylikikefltffhlpnsfqihikngrwcsfripts kswfirsrcxsnssrsckhvikyeiisxlkkfhdnnpnlsnsssik Frame B: ICNDLPFPILVAQCVSTIDGIDKMALNFSGSGLSSSSGSNGKGVSNPVRLLGELRLDPGE YKPFHWEENVENKKISIRPITNEKNPQEWRWSGGFFVDSISDYVVKSRNTERPDHDSLLF HVNIKEKQGTHFIRIPLSSKESPPYIIQNDTQFKISFFQRDSPENIDYIEPKEKLCYGWD EPSAEYVLSVAVEGKTLKKRINVNKI--- ---LAMGGIGXGRGIXQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDL AXKTTEGIKNXTNLQSQAERVRXPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSY IWHHIINQECTIIXSDHRIILSKSKKNFLHSSFIFQIPFKFIKSNEMVDDGVLLEFDPPQ NLGLLDRDVKXKVIPVDDLNVNMLLNMKLSXAknsmiiiqiyqilpll Frame C: famiyhsqfllnvlvlsmvsirwhsisvvvvvvvqvvmvkvfqilldyvndilvn inhsigkrmlkikrfqldqlpmkrilkngvgqvvslliplvitlrveipnvlitilsys miskrnkvlislefhfqvkkvhlisfkmilnskshssnvihqrisiilnqkksfamvgm nhlqnmfslslrvkhksvsmsir--- ---qwvvlvwvvvxfkvlqvslqnqlkvqrkvvsqvlpkvlkvlvlqlnqlppsi qxkqxkvlktlqifkvkqnvfvxqdaflmitfyvhsmklkvkvgsfkpltkvnmllivt fgiissiknvpssxliielsyqnlkrisyivlssskflsnslnqmkwmmvffnlthlk ilvyiamlnxkfqsmilmtcyinylxlekip**skfikffly
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHF479 (VHF479Q) /CSM/VH/VHF4-D/VHF479Q.Seq.d/ 2484 0.0 VHP758 (VHP758Q) /CSM/VH/VHP7-C/VHP758Q.Seq.d/ 1275 0.0 SHF567 (SHF567Q) /CSM/SH/SHF5-C/SHF567Q.Seq.d/ 1275 0.0 CHS386 (CHS386Q) /CSM/CH/CHS3-D/CHS386Q.Seq.d/ 1267 0.0 SHG388 (SHG388Q) /CSM/SH/SHG3-D/SHG388Q.Seq.d/ 1259 0.0 SHA536 (SHA536Q) /CSM/SH/SHA5-B/SHA536Q.Seq.d/ 1259 0.0 CHM671 (CHM671Q) /CSM/CH/CHM6-C/CHM671Q.Seq.d/ 1245 0.0 AFG252 (AFG252Q) /CSM/AF/AFG2-C/AFG252Q.Seq.d/ 1245 0.0 CHP594 (CHP594Q) /CSM/CH/CHP5-D/CHP594Q.Seq.d/ 1219 0.0 SHB206 (SHB206Q) /CSM/SH/SHB2-A/SHB206Q.Seq.d/ 1174 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ439877) Dictyostelium discoideum cDNA clone:ddv41n20, 3' ... 1296 0.0 1 (BJ446378) Dictyostelium discoideum cDNA clone:ddv62d15, 3' ... 1275 0.0 1 (BJ386636) Dictyostelium discoideum cDNA clone:ddc58l21, 3' ... 1267 0.0 1 (BJ421165) Dictyostelium discoideum cDNA clone:ddv41n20, 5' ... 1227 0.0 1 (BJ370375) Dictyostelium discoideum cDNA clone:ddc53k23, 5' ... 1219 0.0 1 (BJ406519) Dictyostelium discoideum cDNA clone:dds35e17, 3' ... 1211 0.0 2 (BJ406942) Dictyostelium discoideum cDNA clone:dds36p21, 3' ... 1201 0.0 2 (BJ403500) Dictyostelium discoideum cDNA clone:dds25g09, 3' ... 1201 0.0 2 (BJ383924) Dictyostelium discoideum cDNA clone:ddc47m18, 3' ... 1195 0.0 2 (BJ342346) Dictyostelium discoideum cDNA clone:dda13g14, 3' ... 1183 0.0 2
dna update	2008.10.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q54LB8) RecName: Full=Putative vacuolar protein sorting-associa... 389 e-106 (Q54LN2) RecName: Full=Putative vacuolar protein sorting-associa... 110 9e-23 AE017343_227(AE017343\|pid:none) Cryptococcus neoformans var. neo... 76 3e-12 CR382125_24(CR382125\|pid:none) Kluyveromyces lactis strain NRRL ... 75 4e-12 AF079445_1(AF079445\|pid:none) Dictyostelium discoideum TipC (tip... 73 3e-11 AC116957_70(AC116957\|pid:none) Dictyostelium discoideum chromoso... 72 4e-11 AP007155_926(AP007155\|pid:none) Aspergillus oryzae RIB40 genomic... 70 2e-10 AK030931_1(AK030931\|pid:none) Mus musculus adult male thymus cDN... 70 2e-10 FN357331_29(FN357331\|pid:none) Schistosoma mansoni genome sequen... 69 3e-10 AM270077_11(AM270077\|pid:none) Aspergillus niger contig An04c016... 69 4e-10
protein update	2009. 7. 4
PSORT	psg: 0.75 gvh: 0.61 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 28.0 %: nuclear 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for VHF479 is cyt
5' end seq. ID	VHF479F
5' end seq.	>VHF479F.Seq AATTTGCAATGATTTACCATTCCCAATTCTAGTTGCTCAATGTGTTAGTACTATCGATGG TATCGATAAGATGGCACTCAATTTCAGTGGTAGTGGTTTGAGTAGTAGTTCAGGTAGTAA TGGTAAAGGTGTTTCAAATCCTGTTAGATTACTAGGTGAACTAAGATTAGATCCTGGTGA ATATAAACCATTCCATTGGGAAGAGAATGTTGAAAATAAAAAGATTTCAATTAGACCAAT TACCAATGAAAAGAATCCTCAAGAATGGCGTTGGTCAGGTGGTTTCTTTGTTGATTCCAT TAGTGATTACGTTGTAAAGAGTAGAAATACCGAACGTCCTGATCACGATTCTCTCTTATT CCATGTGAATATCAAAGAGAAACAAGGTACTCATTTCATTAGAATTCCACTTTCAAGTAA AGAAAGTCCACCTTATATCATTCAAAATGATACTCAATTCAAAATCTCATTCTTCCAACG TGATTCACCAGAGAATATCGATTATATTGAACCAAAAGAAAAGCTTTGCTATGGTTGGGA TGAACCATCTGCAGAATATGTTCTCTCTGTCGCTGTAGAGGGTAAAACATTGAAAAAGCG TATCAATGTCAATAAGATTNNNNNNNNNN
Length of 5' end seq.	629
3' end seq. ID	VHF479Z
3' end seq.	>VHF479Z.Seq NNNNNNNNNNTTTAGCAATGGGTGGTATTGGTNTGGGTCGTGGTATTNTTCAAGGTATTA CAGGTATCGTTACAAAACCAGTTGAAGGTGCAAAGAAAGGTGGTTTCGCAGGTTTTGCCA AAGGTTTAGCTCAAGGTGTTGTAGGTGTTGCAGTTAAACCAACTACCGCCGTAATCGATT TAGCAANTAAAACAACNGAAGGTATTAAAAACNCTACAAATCTTCAAAGTCAAGCAGAAC GTGTTCGTCNTCCAAGATGCTTTTCTCATGATAACGTTTTACGTCCATTCGATGAAGTTG AAAGTGAAGGTTGGTTCCTTTTGAAAACCGCTCACAAAGGTAAACATGCTTCTGATAGTT ACATTTGGCATCATATCATCAATCAAGAATGTACCATCATCATNTCTGATCATAGAATTA TCTTATCAAAATCTAAAAAGAATTTCTTACATAGTTCTTTCATCTTCCAAATTCCTTTCA AATTCATTAAATCAAATGAAATGGTAGATGATGGTGTTCTTTTAGAATTTGACCCACCTC AAAATCTTGGTTTATTAGATCGCGATGTTAAATNTAAAGTAATTCCAGTCGATGATCTTA ATGTAAACATGTTATTAAATATGAAATTATCTCANGCTTGAAAAAATTCCATGATAATAA TCCAAATTTATCAAATTCTTCCTCTATTAAA
Length of 3' end seq.	691
Connected seq. ID	VHF479P
Connected seq.	>VHF479P.Seq AATTTGCAATGATTTACCATTCCCAATTCTAGTTGCTCAATGTGTTAGTACTATCGATGG TATCGATAAGATGGCACTCAATTTCAGTGGTAGTGGTTTGAGTAGTAGTTCAGGTAGTAA TGGTAAAGGTGTTTCAAATCCTGTTAGATTACTAGGTGAACTAAGATTAGATCCTGGTGA ATATAAACCATTCCATTGGGAAGAGAATGTTGAAAATAAAAAGATTTCAATTAGACCAAT TACCAATGAAAAGAATCCTCAAGAATGGCGTTGGTCAGGTGGTTTCTTTGTTGATTCCAT TAGTGATTACGTTGTAAAGAGTAGAAATACCGAACGTCCTGATCACGATTCTCTCTTATT CCATGTGAATATCAAAGAGAAACAAGGTACTCATTTCATTAGAATTCCACTTTCAAGTAA AGAAAGTCCACCTTATATCATTCAAAATGATACTCAATTCAAAATCTCATTCTTCCAACG TGATTCACCAGAGAATATCGATTATATTGAACCAAAAGAAAAGCTTTGCTATGGTTGGGA TGAACCATCTGCAGAATATGTTCTCTCTGTCGCTGTAGAGGGTAAAACATTGAAAAAGCG TATCAATGTCAATAAGATT----------TTTAGCAATGGGTGGTATTGGTNTGGGTCGT GGTATTNTTCAAGGTATTACAGGTATCGTTACAAAACCAGTTGAAGGTGCAAAGAAAGGT GGTTTCGCAGGTTTTGCCAAAGGTTTAGCTCAAGGTGTTGTAGGTGTTGCAGTTAAACCA ACTACCGCCGTAATCGATTTAGCAANTAAAACAACNGAAGGTATTAAAAACNCTACAAAT CTTCAAAGTCAAGCAGAACGTGTTCGTCNTCCAAGATGCTTTTCTCATGATAACGTTTTA CGTCCATTCGATGAAGTTGAAAGTGAAGGTTGGTTCCTTTTGAAAACCGCTCACAAAGGT AAACATGCTTCTGATAGTTACATTTGGCATCATATCATCAATCAAGAATGTACCATCATC ATNTCTGATCATAGAATTATCTTATCAAAATCTAAAAAGAATTTCTTACATAGTTCTTTC ATCTTCCAAATTCCTTTCAAATTCATTAAATCAAATGAAATGGTAGATGATGGTGTTCTT TTAGAATTTGACCCACCTCAAAATCTTGGTTTATTAGATCGCGATGTTAAATNTAAAGTA ATTCCAGTCGATGATCTTAATGTAAACATGTTATTAAATATGAAATTATCTCANGCTTGA AAAAATTCCATGATAATAATCCAAATTTATCAAATTCTTCCTCTATTAAA
Length of connected seq.	1300
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas