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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF478
Library VH
(Link to library)
Clone ID VHF478
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11096-1|Contig-U12663-1
Original site URL
Representative seq. ID VHF478P
(Link to Original site)
Representative DNA sequence 
>VHF478 (VHF478Q) /CSM/VH/VHF4-D/VHF478Q.Seq.d/
CATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTCCG
CAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAAAA
AAAAAXXXXXXXXXXAACTTTTAGGATATGTTGAAAGTTCATAAAAAAGGTATTCGTCGT
GCCGCTGTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCTTCAAGAGGTATTGGCA
ACCTTATTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCC
ATTGCCATTGTTGCGGAAACTTGTGCACNTTATACCGTTTTACCAGGTCTAATCAATGAA
TATCGTATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCNTCTTT
GAATATATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCNTACTCGAAGAT
GCANTCATGGATAGAGATGCTGTACATCGTCAAACCGCTTGNTCTGCAATTAAACATATT
TCATTGGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTT
TGGCCAAATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAA
sequence update 2002.10.25
Translated Amino Acid sequence 
lhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---LLGYVESS*krysscrckyiwlhcksywssrgignlikqfessrsskqslynrchch
ccgnlctlyrftrsnq*isysrvecskwcfeififxl*iywrng*rlylrrnyxtrrcxh
g*rcctssnrlxcn*tyfigcngfrl*rfthsftqlrlakcfrnfstcyqrflrgr*
Translated Amino Acid sequence (All Frames) 
Frame A:
hymfdcrifhrfflf*nkfpqfqqikrnyrdki*ynii*kk---

---nf*dmlkvhkkgirraavntfgyiakaiglqevlatllnnlkvqdrqnrvcttvaia
ivaetcaxytvlpglineyripelnvqngvlkslsfxfeyigemgkdyiyavttxledax
mdrdavhrqtaxsaikhislgvmglgcedslthllnyvwpnvfetsphvinafleave

Frame B:
itcsiveyftdffyfkinfrnsnk*keiieikfnii*ykkk---

---tfric*kfikkvfvvpl*ihlvtlqkllvfkrywqpy*ti*kfkivktefvqplplp
llrklvhxipfyqv*smnivfqs*mfkmvf*nlylsslnilakwvktiftp*lpyskmxs
wiemlyivkplxlqlnifhwv*wv*vvkihsliysitfgqmfskllhmlstls*rpl

Frame C:
lhvrl*nisqiffilk*isaiptnkkkl*r*nli*YNIKKK---

---LLGYVESS*krysscrckyiwlhcksywssrgignlikqfessrsskqslynrchch
ccgnlctlyrftrsnq*isysrvecskwcfeififxl*iywrng*rlylrrnyxtrrcxh
g*rcctssnrlxcn*tyfigcngfrl*rfthsftqlrlakcfrnfstcyqrflrgr*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF478 (VHF478Q) /CSM/VH/VHF4-D/VHF478Q.Seq.d/                       1011   0.0
AHM560 (AHM560Q) /CSM/AH/AHM5-C/AHM560Q.Seq.d/                        971   0.0
AHD733 (AHD733Q) /CSM/AH/AHD7-B/AHD733Q.Seq.d/                        971   0.0
AHD177 (AHD177Q) /CSM/AH/AHD1-D/AHD177Q.Seq.d/                        971   0.0
VHA852 (VHA852Q) /CSM/VH/VHA8-C/VHA852Q.Seq.d/                        969   0.0
SHA183 (SHA183Q) /CSM/SH/SHA1-D/SHA183Q.Seq.d/                        969   0.0
AHA193 (AHA193Q) /CSM/AH/AHA1-D/AHA193Q.Seq.d/                        969   0.0
SHE486 (SHE486Q) /CSM/SH/SHE4-D/SHE486Q.Seq.d/                        965   0.0
SHF290 (SHF290Q) /CSM/SH/SHF2-D/SHF290Q.Seq.d/                        963   0.0
CHM817 (CHM817Q) /CSM/CH/CHM8-A/CHM817Q.Seq.d/                        963   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439868) Dictyostelium discoideum cDNA clone:ddv41l20, 3' ...  1011   0.0    1
(AC117082) Dictyostelium discoideum chromosome 2 map complem...   969   0.0    2
(BJ436903) Dictyostelium discoideum cDNA clone:ddv32h14, 3' ...   969   0.0    1
(BJ403331) Dictyostelium discoideum cDNA clone:dds24e21, 3' ...   969   0.0    1
(BJ355365) Dictyostelium discoideum cDNA clone:dda56g15, 3' ...   969   0.0    1
(BJ349971) Dictyostelium discoideum cDNA clone:dda38b09, 3' ...   969   0.0    1
(BJ349853) Dictyostelium discoideum cDNA clone:dda37i19, 3' ...   969   0.0    1
(BJ347997) Dictyostelium discoideum cDNA clone:dda31i23, 3' ...   969   0.0    1
(BJ405764) Dictyostelium discoideum cDNA clone:dds32l22, 3' ...   965   0.0    1
(BJ406288) Dictyostelium discoideum cDNA clone:dds34c24, 3' ...   963   0.0    1
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_305(AP008208|pid:none) Oryza sativa (japonica cultivar-...   298   1e-79
AK221391_1(AK221391|pid:none) Arabidopsis thaliana mRNA for nucl...   296   5e-79
AE014134_132(AE014134|pid:none) Drosophila melanogaster chromoso...   285   6e-76
CP001324_246(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   284   2e-75
(O57683) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   283   2e-75
(O75533) RecName: Full=Splicing factor 3B subunit 1; AltName: Fu...   283   2e-75
BC172813_1(BC172813|pid:none) Synthetic construct Homo sapiens c...   282   7e-75
CP000583_21(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   277   2e-73
AM270010_46(AM270010|pid:none) Aspergillus niger contig An02c015...   273   4e-72
AP007159_186(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...   273   4e-72
protein update 2009. 7. 4
PSORT -
5' end seq. ID VHF478F
5' end seq. 
>VHF478F.Seq
CATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTCCG
CAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAAAA
AAAAANNNNNNNNNN
Length of 5' end seq. 135
3' end seq. ID VHF478Z
3' end seq. 
>VHF478Z.Seq
NNNNNNNNNNAACTTTTAGGATATGTTGAAAGTTCATAAAAAAGGTATTCGTCGTGCCGC
TGTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCTTCAAGAGGTATTGGCAACCTT
ATTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCCATTGC
CATTGTTGCGGAAACTTGTGCACNTTATACCGTTTTACCAGGTCTAATCAATGAATATCG
TATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCNTCTTTGAATA
TATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCNTACTCGAAGATGCANT
CATGGATAGAGATGCTGTACATCGTCAAACCGCTTGNTCTGCAATTAAACATATTTCATT
GGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTTTGGCC
AAATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAA
Length of 3' end seq. 535
Connected seq. ID VHF478P
Connected seq. 
>VHF478P.Seq
CATTACATGTTCGATTGTAGAATATTTCACAGATTTTTTTTATTTTAAAATAAATTTCCG
CAATTCCAACAAATAAAAAGAAATTATAGAGATAAAATTTAATATAATATAATATAAAAA
AAAAA----------AACTTTTAGGATATGTTGAAAGTTCATAAAAAAGGTATTCGTCGT
GCCGCTGTAAATACATTTGGTTACATTGCAAAAGCTATTGGTCTTCAAGAGGTATTGGCA
ACCTTATTAAACAATTTGAAAGTTCAAGATCGTCAAAACAGAGTTTGTACAACCGTTGCC
ATTGCCATTGTTGCGGAAACTTGTGCACNTTATACCGTTTTACCAGGTCTAATCAATGAA
TATCGTATTCCAGAGTTGAATGTTCAAAATGGTGTTTTGAAATCTTTATCTTTCNTCTTT
GAATATATTGGCGAAATGGGTAAAGACTATATTTACGCCGTAACTACCNTACTCGAAGAT
GCANTCATGGATAGAGATGCTGTACATCGTCAAACCGCTTGNTCTGCAATTAAACATATT
TCATTGGGTGTAATGGGTTTAGGTTGTGAAGATTCACTCACTCATTTACTCAATTACGTT
TGGCCAAATGTTTTCGAAACTTCTCCACATGTTATCAACGCTTTCTTAGAGGCCGTTGAA
Length of connected seq. 650
Full length Seq ID -
Full length Seq. -
Length of full length seq. -