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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF476
Library VH
(Link to library)
Clone ID VHF476
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16053-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF476 (VHF476Q) /CSM/VH/VHF4-D/VHF476Q.Seq.d/
XXXXXXXXXXAATTATTANTATCAAANAATTTATTAAATGCATTACCNCCAGNAATTGCA
TCAATGAAAGCATTAAAAGAATTTNNAGCATCAAATAATCCANTTCAAGCNATTCCNNCA
GNAATTGGTGNATTATCAGGTTTAAC
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LLXSXNLLNALPPXIASMKALKEFXASNNPXQAIPXXIGXLSGL
Translated Amino Acid sequence (All Frames) 
Frame A:
---iixikxfikcitxxncinesikrixsik*sxssxsxxnwxiirfn


Frame B:
---LLXSXNLLNALPPXIASMKALKEFXASNNPXQAIPXXIGXLSGL


Frame C:
---yxyqxiy*mhyxqxlhq*kh*knxxhqiixfkxfxqxlvxyqv*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF476 (VHF476Q) /CSM/VH/VHF4-D/VHF476Q.Seq.d/                        198   2e-50
VSH579 (VSH579Q) /CSM/VS/VSH5-D/VSH579Q.Seq.d/                        182   9e-46
VSF874 (VSF874Q) /CSM/VS/VSF8-D/VSF874Q.Seq.d/                        182   9e-46
VFE334 (VFE334Q) /CSM/VF/VFE3-B/VFE334Q.Seq.d/                        182   9e-46
SSM192 (SSM192Q) /CSM/SS/SSM1-D/SSM192Q.Seq.d/                        182   9e-46
SLG759 (SLG759Q) /CSM/SL/SLG7-C/SLG759Q.Seq.d/                        182   9e-46
SFG525 (SFG525Q) /CSM/SF/SFG5-B/SFG525Q.Seq.d/                        182   9e-46
SFF711 (SFF711Q) /CSM/SF/SFF7-A/SFF711Q.Seq.d/                        182   9e-46
CHB850 (CHB850Q) /CSM/CH/CHB8-C/CHB850Q.Seq.d/                        182   9e-46
CFI831 (CFI831Q) /CSM/CF/CFI8-B/CFI831Q.Seq.d/                        182   9e-46
own update 2003.10.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439849) Dictyostelium discoideum cDNA clone:ddv41h20, 3' ...   198   3e-47  1
(AF200466) Dictyostelium discoideum leucine-rich-repeat prot...   182   2e-42  1
(AU267659) Dictyostelium discoideum vegetative cDNA clone:VS...   182   2e-42  1
(AU265933) Dictyostelium discoideum vegetative cDNA clone:VS...   182   2e-42  1
(AU039922) Dictyostelium discoideum slug cDNA, clone SLG759.      182   2e-42  1
(AU038955) Dictyostelium discoideum slug cDNA, clone SSM192.      182   2e-42  1
(BJ430921) Dictyostelium discoideum cDNA clone:ddv9d09, 3' e...   182   2e-42  1
(BJ400664) Dictyostelium discoideum cDNA clone:dds14a07, 3' ...   182   2e-42  1
(BJ398337) Dictyostelium discoideum cDNA clone:dds12f03, 3' ...   182   2e-42  1
(BJ377710) Dictyostelium discoideum cDNA clone:ddc25d14, 3' ...   182   2e-42  1
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54AX5) RecName: Full=Leucine-rich repeat protein lrrA;  &AF200...    51   1e-05
protein update 2009. 3. 3
PSORT 

 psg: 0.87  gvh: 0.60  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHF476 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF476Z
3' end seq. 
>VHF476Z.Seq
NNNNNNNNNNAATTATTANTATCAAANAATTTATTAAATGCATTACCNCCAGNAATTGCA
TCAATGAAAGCATTAAAAGAATTTNNAGCATCAAATAATCCANTTCAAGCNATTCCNNCA
GNAATTGGTGNATTATCAGGTTTAAC
Length of 3' end seq. 146
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -