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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF460
Library VH
(Link to library)
Clone ID VHF460
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF460 (VHF460Q) /CSM/VH/VHF4-C/VHF460Q.Seq.d/
XXXXXXXXXXTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGAC
TATAGAAACGCTTATAAATTCTATCAATATGATCCAANTAAATGGTTGATNTCTGCAATG
TATTATTTAGGCTTGGCTTATGATTTGAAAACTTTNTCCAAAAATGAAATTGAAAAAGGT
ATGATTCAAATGCNCCAAAAACATTTAGACGCAAAGAAACAATCAATNTATTGGGGTATC
AATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAA
AATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATNTTTTGTTAATGAT
CACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCAATGTTT
ACTGGTGAAGTTTATGNTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTTTCAATT
GCTAAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---TFGEGYHNFHHEFPNDYRNAYKFYQYDPXKWLXSAMYYLGLAYDLKTXSKNEIEKGM
IQMXQKHLDAKKQSXYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVEXFVNDH
PGGLAYIKMGIGKDATSMFTGEVYXHSNAAKNLLCQFSIAKIVDNHDKKQQ*skk
Translated Amino Acid sequence (All Frames) 
Frame A:
---niw*rls*lps*ipk*l*krl*ilsi*sx*mvdxcnvlfrlgl*fenfxqk*n*kry
dsnapktfrrketinxlgyq*rrftindnr*i**fg*krk*kvndnqqnrircrxfc**s
prwfslh*ngyw*rcnfnvyw*slxsfkcc*kfimsifnc*nc**s**kttiikkt


Frame B:
---TFGEGYHNFHHEFPNDYRNAYKFYQYDPXKWLXSAMYYLGLAYDLKTXSKNEIEKGM
IQMXQKHLDAKKQSXYWGINKEDLPSMTIDEFNNLVEKENKKLMIINKTVLDVEXFVNDH
PGGLAYIKMGIGKDATSMFTGEVYXHSNAAKNLLCQFSIAKIVDNHDKKQQ*skk


Frame C:
---hlvkviitsimnsqmtietlinsinmiqxng*xlqcii*awlmi*klxpkmklkkv*
fkcxkni*tqrnnqxigvsikkiyhq*qsmnliiwlkkkiks***stkpy*msnxllmit
qvv*ltlkwvlvkmqlqcllvkfmxiqmllkiyyvnfqllklliimiknnnnqkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA271 (VSA271Q) /CSM/VS/VSA2-C/VSA271Q.Seq.d/                        529   e-149
VHQ493 (VHQ493Q) /CSM/VH/VHQ4-D/VHQ493Q.Seq.d/                        529   e-149
VHQ458 (VHQ458Q) /CSM/VH/VHQ4-C/VHQ458Q.Seq.d/                        529   e-149
VHQ401 (VHQ401Q) /CSM/VH/VHQ4-A/VHQ401Q.Seq.d/                        529   e-149
VHQ392 (VHQ392Q) /CSM/VH/VHQ3-D/VHQ392Q.Seq.d/                        529   e-149
VHQ189 (VHQ189Q) /CSM/VH/VHQ1-D/VHQ189Q.Seq.d/                        529   e-149
VHP590 (VHP590Q) /CSM/VH/VHP5-D/VHP590Q.Seq.d/                        529   e-149
VHP465 (VHP465Q) /CSM/VH/VHP4-C/VHP465Q.Seq.d/                        529   e-149
VHP295 (VHP295Q) /CSM/VH/VHP2-D/VHP295Q.Seq.d/                        529   e-149
VHP289 (VHP289Q) /CSM/VH/VHP2-D/VHP289Q.Seq.d/                        529   e-149
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   529   0.0    2
(BJ437267) Dictyostelium discoideum cDNA clone:ddv33p17, 3' ...   529   0.0    2
(BJ441339) Dictyostelium discoideum cDNA clone:ddv46m07, 3' ...   529   0.0    2
(BJ438544) Dictyostelium discoideum cDNA clone:ddv37b08, 3' ...   529   0.0    2
(BJ446526) Dictyostelium discoideum cDNA clone:ddv63b02, 3' ...   529   0.0    2
(BJ438464) Dictyostelium discoideum cDNA clone:ddv37c04, 3' ...   529   0.0    2
(BJ446790) Dictyostelium discoideum cDNA clone:ddv63h23, 3' ...   529   0.0    2
(BJ444743) Dictyostelium discoideum cDNA clone:ddv57g10, 3' ...   529   0.0    2
(BJ437971) Dictyostelium discoideum cDNA clone:ddv35o22, 3' ...   529   0.0    2
(BJ438941) Dictyostelium discoideum cDNA clone:ddv38o21, 3' ...   529   0.0    2
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos...   337   1e-91
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa...   175   6e-43
Y18553_1(Y18553|pid:none) Mortierella alpina ole1 gene for stear...   175   6e-43
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear...   172   6e-42
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   169   3e-41
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9...   169   3e-41
AF510861_1(AF510861|pid:none) Emericella nidulans stearic acid d...   169   4e-41
AB195980_1(AB195980|pid:none) Mortierella alpina gene for omega9...   168   7e-41
AL033501_2(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1822...   168   9e-41
FM992688_770(FM992688|pid:none) Candida dubliniensis CD36 chromo...   167   1e-40
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHF460 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF460Z
3' end seq. 
>VHF460Z.Seq
NNNNNNNNNNTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGAC
TATAGAAACGCTTATAAATTCTATCAATATGATCCAANTAAATGGTTGATNTCTGCAATG
TATTATTTAGGCTTGGCTTATGATTTGAAAACTTTNTCCAAAAATGAAATTGAAAAAGGT
ATGATTCAAATGCNCCAAAAACATTTAGACGCAAAGAAACAATCAATNTATTGGGGTATC
AATAAAGAAGATTTACCATCAATGACAATCGATGAATTTAATAATTTGGTTGAAAAAGAA
AATAAAAAGTTAATGATAATCAACAAAACCGTATTAGATGTCGAATNTTTTGTTAATGAT
CACCCAGGTGGTTTAGCTTACATTAAAATGGGTATTGGTAAAGATGCAACTTCAATGTTT
ACTGGTGAAGTTTATGNTCATTCAAATGCTGCTAAAAATTTATTATGTCAATTTTCAATT
GCTAAAATTGTTGATAATCATGATAAAAAACAACAATAATCAAAAAAACA
Length of 3' end seq. 530
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -