VHF458
Library VH
(Link to library)
Clone ID VHF458
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHF458P
(Link to Original site)
Representative DNA sequence
>VHF458 (VHF458Q) /CSM/VH/VHF4-C/VHF458Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAXX
XXXXXXXXAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAG
AAGGTAACGGTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAA
TTAAAGANTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATG
AAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCNTCCACACTGATGCCATCC
ACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAA
CTGCCTCCCCAACTATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACG
CTATTGGTGGTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAAC
GTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTTCG
GTTTCACCGATGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCG
ATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAG
CCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAA
ACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVG---

---NHEWDKNDAMNIWSFGPEGNGANXIVNVTKGVQYLNEIKXSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTXHTDAIHRGGGQIIPTARRVLYAAELTASPTILEPIYLVEITAPEN
AIGGIXSVLNRRRGIVIGEERRIGSPLLSVKAHLPVLESFGFTDDLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSHXSFQ


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllv---

---NHEWDKNDAMNIWSFGPEGNGANXIVNVTKGVQYLNEIKXSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTXHTDAIHRGGGQIIPTARRVLYAAELTASPTILEPIYLVEITAPEN
AIGGIXSVLNRRRGIVIGEERRIGSPLLSVKAHLPVLESFGFTDDLRSHTAGQAFPQCVF
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLTNSTKNSKQFKSHXSFQ

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*---

---ttngikmmp*tfglsvqkvtvpxsssmspkvfni*mklkxlslvlsngppkkvlfvm
kt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqkt
llvvfxlysivvevlllvknvvsvphyylskliyqy*nxsvspmiyvptlpvklshnvss
iiglqlvlstkirkplksl*pperekv*pqksqi*qiprktlnnlsrtxvfk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVG---

---prmg*k*chehlvfrsrr*rcqxhrqchqrcsife*n*rxfrwcfpmghqrrccl**
kherypfqsl*chxph*chpqrwwsnhpncssctlcc*inclpnylrtnllsrnycprkr
ywwylxctqss*rycyw*rtsyrfpiiicqssftsirixrfhr*ftfphcrssfptmclr
slgfnwccqqr*esh*srfshqkekrfsprnprsdkfhekl*ti*valxfsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF458 (VHF458Q) /CSM/VH/VHF4-C/VHF458Q.Seq.d/ 2436 0.0
VHF330 (VHF330Q) /CSM/VH/VHF3-B/VHF330Q.Seq.d/ 1324 0.0
VHF686 (VHF686Q) /CSM/VH/VHF6-D/VHF686Q.Seq.d/ 1314 0.0
VHE802 (VHE802Q) /CSM/VH/VHE8-A/VHE802Q.Seq.d/ 1312 0.0
VHF681 (VHF681Q) /CSM/VH/VHF6-D/VHF681Q.Seq.d/ 1308 0.0
VHF473 (VHF473Q) /CSM/VH/VHF4-D/VHF473Q.Seq.d/ 1304 0.0
VHE779 (VHE779Q) /CSM/VH/VHE7-D/VHE779Q.Seq.d/ 1304 0.0
VHE885 (VHE885Q) /CSM/VH/VHE8-D/VHE885Q.Seq.d/ 1300 0.0
VHO564 (VHO564Q) /CSM/VH/VHO5-C/VHO564Q.Seq.d/ 1296 0.0
VHN246 (VHN246Q) /CSM/VH/VHN2-B/VHN246Q.Seq.d/ 1296 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439763) Dictyostelium discoideum cDNA clone:ddv41d16, 3' ... 1330 0.0 1
(BJ439727) Dictyostelium discoideum cDNA clone:ddv41l07, 3' ... 1324 0.0 1
(BJ440179) Dictyostelium discoideum cDNA clone:ddv42k22, 3' ... 1314 0.0 1
(BJ439830) Dictyostelium discoideum cDNA clone:ddv41b20, 3' ... 1304 0.0 1
(BJ445805) Dictyostelium discoideum cDNA clone:ddv60o15, 3' ... 1296 0.0 1
(BJ444766) Dictyostelium discoideum cDNA clone:ddv57k12, 3' ... 1296 0.0 1
(BJ444317) Dictyostelium discoideum cDNA clone:ddv56a03, 3' ... 1296 0.0 1
(BJ442915) Dictyostelium discoideum cDNA clone:ddv51h08, 3' ... 1296 0.0 1
(BJ442828) Dictyostelium discoideum cDNA clone:ddv51h04, 3' ... 1296 0.0 1
(BJ442696) Dictyostelium discoideum cDNA clone:ddv50o16, 3' ... 1296 0.0 1
dna update 2008.10.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 415 e-114
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 266 2e-69
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 265 2e-69
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 8e-69
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 263 1e-68
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 263 1e-68
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 262 2e-68
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 262 2e-68
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 262 2e-68
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 260 9e-68
protein update 2009. 7. 4
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHF458 is cyt

5' end seq. ID VHF458F
5' end seq.
>VHF458F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAANN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID VHF458Z
3' end seq.
>VHF458Z.Seq
NNNNNNNNNNAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCC
AGAAGGTAACGGTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGA
AATTAAAGANTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGA
TGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCNTCCACACTGATGCCAT
CCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATT
AACTGCCTCCCCAACTATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAA
CGCTATTGGTGGTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGA
ACGTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTT
CGGTTTCACCGATGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTT
CGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTT
AGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAA
AAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAAG
Length of 3' end seq. 699
Connected seq. ID VHF458P
Connected seq.
>VHF458P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAA--
--------AACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAG
AAGGTAACGGTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAA
TTAAAGANTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATG
AAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCNTCCACACTGATGCCATCC
ACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAA
CTGCCTCCCCAACTATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACG
CTATTGGTGGTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAAC
GTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTTCG
GTTTCACCGATGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCG
ATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAG
CCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTGACAAATTCCACGAAAA
ACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAAG
Length of connected seq. 1287
Full length Seq ID -
Full length Seq. -
Length of full length seq. -