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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF446
Library VH
(Link to library)
Clone ID VHF446
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12653-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF446 (VHF446Q) /CSM/VH/VHF4-B/VHF446Q.Seq.d/
AAATAATTATTTTTATTTTATTTTATTCATTAAAAATTAATATAAATAAAATATAAAATA
AAATGTCTACAGCAAAATTAGATTTTGTTAGAGCATATGAAAAAGAAGTTCAAAATAAAT
GGGAAAGTGATAAACAATTTGAAATTGATGCATTAGATGCACCAGATGCTGAACATCCAA
AATATTTAGCAACATTCCCATACCCATATATGAATGGAAGATTACATGTTGGTCATGTTT
TCACAATCACCAAAGCAGAATTTATGTGTCAATTCCAAAGATTAATGGGTAAAAGAGTTT
TATTCCCATTTGCATTCCATTGTACTGGTATGCCAATTAAAGCATGTGCTGATAAATTAA
AGAAAGAAATTGAACAATTTGGTTGTCCACCAGTTTTCCCAGTTATTGAAGAAAAACCAA
TTCAAGAAGTAACAACAGCAGTAAAAGAAGATCCACTTTCATTTAAATCAAAGAAAACAA
AAGCAGTAGCAAAATCAGGAGGAGCAGTATATCAATGGAAGATTATGCAAAGTTTAGXXX
XXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iiifilfyslkininki*NKMSTAKLDFVRAYEKEVQNKWESDKQFEIDALDAPDAEHPK
YLATFPYPYMNGRLHVGHVFTITKAEFMCQFQRLMGKRVLFPFAFHCTGMPIKACADKLK
KEIEQFGCPPVFPVIEEKPIQEVTTAVKEDPLSFKSKKTKAVAKSGGAVYQWKIMQSL--
-
Translated Amino Acid sequence (All Frames) 
Frame A:
k*lflfyfih*kli*ikykikclqqn*illehmkkkfkingkvinnlklmh*mhqmlniq
ni*qhshthi*medymlvmfsqspkqnlcvnskd*wvkefyshlhsivlvcqlkhvlin*
rkklnnlvvhqfsqllkknqfkk*qqq*kkihfhlnqrkqkq*qnqeeqyingrlckv--
-


Frame B:
nnyfyfilfikn*yk*nik*nvyskirfc*si*krssk*mgk**ti*n*circtrc*tsk
ifsnipipiyewkitcwscfhnhqsriyvsipking*ksfipiciplywyan*smc**ik
ern*tiwlstsfpsy*rktnsrsnnsskrrstfi*ikenkssskirrssismedyakf--
-


Frame C:
iiifilfyslkininki*NKMSTAKLDFVRAYEKEVQNKWESDKQFEIDALDAPDAEHPK
YLATFPYPYMNGRLHVGHVFTITKAEFMCQFQRLMGKRVLFPFAFHCTGMPIKACADKLK
KEIEQFGCPPVFPVIEEKPIQEVTTAVKEDPLSFKSKKTKAVAKSGGAVYQWKIMQSL--
-
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM137 (VHM137Q) /CSM/VH/VHM1-B/VHM137Q.Seq.d/                        938   0.0
VHH760 (VHH760Q) /CSM/VH/VHH7-C/VHH760Q.Seq.d/                        938   0.0
VHH744 (VHH744Q) /CSM/VH/VHH7-B/VHH744Q.Seq.d/                        938   0.0
VHF446 (VHF446Q) /CSM/VH/VHF4-B/VHF446Q.Seq.d/                        938   0.0
VHC233 (VHC233Q) /CSM/VH/VHC2-B/VHC233Q.Seq.d/                        938   0.0
SHG191 (SHG191Q) /CSM/SH/SHG1-D/SHG191Q.Seq.d/                        938   0.0
SHC504 (SHC504Q) /CSM/SH/SHC5-A/SHC504Q.Seq.d/                        938   0.0
CHS182 (CHS182Q) /CSM/CH/CHS1-D/CHS182Q.Seq.d/                        938   0.0
CHE666 (CHE666Q) /CSM/CH/CHE6-C/CHE666Q.Seq.d/                        938   0.0
AHQ494 (AHQ494Q) /CSM/AH/AHQ4-D/AHQ494Q.Seq.d/                        938   0.0
own update 2003.10.17
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ425322) Dictyostelium discoideum cDNA clone:ddv55i09, 5' ...   936   0.0    1
(BJ422641) Dictyostelium discoideum cDNA clone:ddv46h15, 5' ...   936   0.0    1
(BJ422563) Dictyostelium discoideum cDNA clone:ddv46h11, 5' ...   936   0.0    1
(BJ422029) Dictyostelium discoideum cDNA clone:ddv44i13, 5' ...   936   0.0    1
(BJ421011) Dictyostelium discoideum cDNA clone:ddv41l12, 5' ...   936   0.0    1
(BJ419162) Dictyostelium discoideum cDNA clone:ddv35a10, 5' ...   936   0.0    1
(BJ394872) Dictyostelium discoideum cDNA clone:dds36e23, 5' ...   936   0.0    1
(BJ392822) Dictyostelium discoideum cDNA clone:dds29g01, 5' ...   936   0.0    1
(BJ371616) Dictyostelium discoideum cDNA clone:ddc58c21, 5' ...   936   0.0    1
(BJ368342) Dictyostelium discoideum cDNA clone:ddc46f10, 5' ...   936   0.0    1
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC079713_1(BC079713|pid:none) Xenopus laevis MGC82093 protein, m...   184   1e-45
BC090117_1(BC090117|pid:none) Xenopus tropicalis MGC97760 protei...   182   5e-45
BC087655_1(BC087655|pid:none) Rattus norvegicus leucyl-tRNA synt...   181   1e-44
(Q9P2J5) RecName: Full=Leucyl-tRNA synthetase, cytoplasmic;     ...   180   2e-44
D84223_1(D84223|pid:none) Homo sapiens mRNA for leucyl tRNA synt...   180   2e-44
AK315178_1(AK315178|pid:none) Homo sapiens cDNA, FLJ96156, highl...   180   2e-44
BC068041_1(BC068041|pid:none) Homo sapiens leucyl-tRNA synthetas...   180   2e-44
AK030778_1(AK030778|pid:none) Mus musculus 8 days embryo whole b...   178   7e-44
AK009823_1(AK009823|pid:none) Mus musculus adult male tongue cDN...   178   7e-44
AK129337_1(AK129337|pid:none) Mus musculus mRNA for mKIAA1352 pr...   178   7e-44
protein update 2009. 7. 4
PSORT 

 psg: 0.44  gvh: 0.30  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHF446 is nuc
5' end seq. ID VHF446F
5' end seq. 
>VHF446F.Seq
AAATAATTATTTTTATTTTATTTTATTCATTAAAAATTAATATAAATAAAATATAAAATA
AAATGTCTACAGCAAAATTAGATTTTGTTAGAGCATATGAAAAAGAAGTTCAAAATAAAT
GGGAAAGTGATAAACAATTTGAAATTGATGCATTAGATGCACCAGATGCTGAACATCCAA
AATATTTAGCAACATTCCCATACCCATATATGAATGGAAGATTACATGTTGGTCATGTTT
TCACAATCACCAAAGCAGAATTTATGTGTCAATTCCAAAGATTAATGGGTAAAAGAGTTT
TATTCCCATTTGCATTCCATTGTACTGGTATGCCAATTAAAGCATGTGCTGATAAATTAA
AGAAAGAAATTGAACAATTTGGTTGTCCACCAGTTTTCCCAGTTATTGAAGAAAAACCAA
TTCAAGAAGTAACAACAGCAGTAAAAGAAGATCCACTTTCATTTAAATCAAAGAAAACAA
AAGCAGTAGCAAAATCAGGAGGAGCAGTATATCAATGGAAGATTATGCAAAGTTTAGNNN
NNNNNNN
Length of 5' end seq. 547
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -