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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF437
Library VH
(Link to library)
Clone ID VHF437
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15043-1
Original site URL
Representative seq. ID VHF437P
(Link to Original site)
Representative DNA sequence 
>VHF437 (VHF437Q) /CSM/VH/VHF4-B/VHF437Q.Seq.d/
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCCAGGATCAGTTTATCAAACTAGACCATTTGT
ATGTGGTGAATTTGTAAATTGTTCATTAGTTTTAAATGTGTTTGAAGCAAGXXXXXXXXX
XATGATAAGAGTTGAGTATCATTTACTTGTGAATTTGGATATCCCAAGTTGTGTTGNCCT
TCGTTTGNAATTACCAATTACCATAGTTCAACCAGACCCAAAGTTTGAAACNCTTCCAAA
TCCATTGACTGAAATTGGTAATTTACCACGTTACGTTAAAGATTGGTCAATTAAAAATTT
CCATAGTTGGGTTCTATTTAAAAAACAATGTCCAGATGTGATGGCTTTGAATCCGGAATT
CTATCAATATAATCTNTCTGGCTCTGATTTAATGCAACTTCCAACGGAAACCNTCTATTC
AATATTCAAAGGAGCCGGTCCAAGGACTCAAGAATTGGTTAATGATTTACAATCTCAAAT
CTTTGAAATTAAATTGGTTAGAAATTTCCTTAAAGAACTTCAACTTTCAAATTTNATAGA
TTACTTTGAAAAACAAACTATCACTTGGGATA
sequence update 2002.10.25
Translated Amino Acid sequence 
FHSIQIKMTQRSLKINIIEGKDLKGLDSGGVSDCYVKFKCGPISAKTEVIKKSTSPIWNY
MINIGNVEENTLLQFECFDWERIGNNRTMGKTQAFVSDLSSGAKRNLMDQWLRLDTKGFI
RISYEFTPPYPLETESTNSPNLSVVGNGSSSSSSLMYNPTPVYFKPIFLPTIPSETINNN
KSTTCHFLIPGSVYQTRPFVCGEFVNCSLVLNVFEA---

---MIRVEYHLLVNLDIPSCVXLRLXLPITIVQPDPKFETLPNPLTEIGNLPRYVKDWSI
KNFHSWVLFKKQCPDVMALNPEFYQYNLSGSDLMQLPTETXYSIFKGAGPRTQELVNDLQ
SQIFEIKLVRNFLKELQLSNXIDYFEKQTITWD
Translated Amino Acid sequence (All Frames) 
Frame A:
isfntnkndskkfkdkyy*r*rfkrir*wwc**llc*i*mwpnlsqnrsn*kinkpnlel
yd*ywkc*reyiiti*mf*lgenr***nygkntsic**fikwskkkfngsmvkiry*rih
*nfi*iystisirnrinqftkfisswkw******fnv*sntslf*tnfltnntirnnk**
*kynmsffnsrislsn*ticmw*icklfisfkcv*sk---

---MIRVEYHLLVNLDIPSCVXLRLXLPITIVQPDPKFETLPNPLTEIGNLPRYVKDWSI
KNFHSWVLFKKQCPDVMALNPEFYQYNLSGSDLMQLPTETXYSIFKGAGPRTQELVNDLQ
SQIFEIKLVRNFLKELQLSNXIDYFEKQTITWD

Frame B:
FHSIQIKMTQRSLKINIIEGKDLKGLDSGGVSDCYVKFKCGPISAKTEVIKKSTSPIWNY
MINIGNVEENTLLQFECFDWERIGNNRTMGKTQAFVSDLSSGAKRNLMDQWLRLDTKGFI
RISYEFTPPYPLETESTNSPNLSVVGNGSSSSSSLMYNPTPVYFKPIFLPTIPSETINNN
KSTTCHFLIPGSVYQTRPFVCGEFVNCSLVLNVFEA---

---**elsiiyl*iwisqvvlxfvxnyqlp*fnqtqslkxfqih*lklviyhvtlkigql
kisivgfylknnvqm*wl*irnsiniixlali*cnfqrkpsiqyskepvqglknwlmiyn
lkslklnwleislknfnfqix*itlknklslgi

Frame C:
fiqyk*k*lkev*r*illkvki*kd*ivvvlvivmlnlnvaqsqpkqk*lknqqaqfgii
*lilemlkrihyynlnvligre*viielwekhkhllviyqveqkei*wing*d*ilkdsl
efhmnllhhih*kqnqpihqiyq*lemvvvvvvv*ciiqhqfilnqfsyqqyhqkq*iii
kvqhvif*fqdqfikldhlyvvnl*ivh*f*mclkq---

---dks*vsftcefgypklcxpsfxitnyhsstrpkv*nxsksid*nw*fttlr*rlvn*
kfp*lgsi*ktmsrcdgfesgilsi*sxwl*fnatsngnxlfniqrsrskdsrig**fti
snl*n*ig*kfp*rtstfkfxrll*ktnyhlg
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF437 (VHF437Q) /CSM/VH/VHF4-B/VHF437Q.Seq.d/                       1191   0.0
VHB772 (VHB772Q) /CSM/VH/VHB7-C/VHB772Q.Seq.d/                        878   0.0
VFK842 (VFK842Q) /CSM/VF/VFK8-B/VFK842Q.Seq.d/                        870   0.0
VFD268 (VFD268Q) /CSM/VF/VFD2-C/VFD268Q.Seq.d/                        868   0.0
VFK545 (VFK545Q) /CSM/VF/VFK5-B/VFK545Q.Seq.d/                        858   0.0
VFJ726 (VFJ726Q) /CSM/VF/VFJ7-B/VFJ726Q.Seq.d/                        858   0.0
SSG219 (SSG219Q) /CSM/SS/SSG2-A/SSG219Q.Seq.d/                        817   0.0
SSC550 (SSC550Q) /CSM/SS/SSC5-C/SSC550Q.Seq.d/                        763   0.0
AHQ788 (AHQ788Q) /CSM/AH/AHQ7-D/AHQ788Q.Seq.d/                        613   e-174
SLF546 (SLF546Q) /CSM/SL/SLF5-B/SLF546Q.Seq.d/                        573   e-162
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421001) Dictyostelium discoideum cDNA clone:ddv41j10, 5' ...   878   0.0    2
(BJ419001) Dictyostelium discoideum cDNA clone:ddv34p17, 5' ...   878   0.0    2
(BJ415349) Dictyostelium discoideum cDNA clone:ddv22d12, 5' ...   870   0.0    2
(BJ412261) Dictyostelium discoideum cDNA clone:ddv7g18, 5' e...   868   0.0    2
(BJ414741) Dictyostelium discoideum cDNA clone:ddv20d07, 5' ...   835   0.0    2
(BJ415374) Dictyostelium discoideum cDNA clone:ddv22i11, 5' ...   805   0.0    3
(C84049) Dictyostelium discoideum slug cDNA, clone SSC550.        763   0.0    2
(BJ439720) Dictyostelium discoideum cDNA clone:ddv41j10, 3' ...   858   0.0    1
(BJ437587) Dictyostelium discoideum cDNA clone:ddv34p17, 3' ...   858   0.0    1
(BJ433595) Dictyostelium discoideum cDNA clone:ddv22i11, 3' ...   858   0.0    1
dna update 2008.10.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CH0) RecName: Full=Arrestin domain-containing protein C;          399   e-110
AM410050_1(AM410050|pid:none) Physcomitrella patens partial NTMC...    68   5e-10
(Q03640) RecName: Full=Tricalbin-3;  &S48824(S48824) &Z46373_10(...    59   3e-07
FN357909_6(FN357909|pid:none) Schistosoma mansoni genome sequenc...    58   5e-07
AY337620_1(AY337620|pid:none) Schistosoma mansoni protein kinase...    58   5e-07
CU928168_700(CU928168|pid:none) Kluyveromyces thermotolerans str...    57   1e-06
AE016818_493(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    57   2e-06
AE013599_2510(AE013599|pid:none) Drosophila melanogaster chromos...    55   6e-06
X05279_1(X05279|pid:none) Drosophila melanogaster PKC gene exon ...    55   6e-06
AP008207_825(AP008207|pid:none) Oryza sativa (japonica cultivar-...    55   6e-06
protein update 2009. 7. 4
PSORT 

 psg: 0.66  gvh: 0.36  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHF437 is nuc
5' end seq. ID VHF437F
5' end seq. 
>VHF437F.Seq
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCCAGGATCAGTTTATCAAACTAGACCATTTGT
ATGTGGTGAATTTGTAAATTGTTCATTAGTTTTAAATGTGTTTGAAGCAAGNNNNNNNNN
N
Length of 5' end seq. 661
3' end seq. ID VHF437Z
3' end seq. 
>VHF437Z.Seq
NNNNNNNNNNATGATAAGAGTTGAGTATCATTTACTTGTGAATTTGGATATCCCAAGTTG
TGTTGNCCTTCGTTTGNAATTACCAATTACCATAGTTCAACCAGACCCAAAGTTTGAAAC
NCTTCCAAATCCATTGACTGAAATTGGTAATTTACCACGTTACGTTAAAGATTGGTCAAT
TAAAAATTTCCATAGTTGGGTTCTATTTAAAAAACAATGTCCAGATGTGATGGCTTTGAA
TCCGGAATTCTATCAATATAATCTNTCTGGCTCTGATTTAATGCAACTTCCAACGGAAAC
CNTCTATTCAATATTCAAAGGAGCCGGTCCAAGGACTCAAGAATTGGTTAATGATTTACA
ATCTCAAATCTTTGAAATTAAATTGGTTAGAAATTTCCTTAAAGAACTTCAACTTTCAAA
TTTNATAGATTACTTTGAAAAACAAACTATCACTTGGGATA
Length of 3' end seq. 461
Connected seq. ID VHF437P
Connected seq. 
>VHF437P.Seq
ATTTCATTCAATACAAATAAAAATGACTCAAAGAAGTTTAAAGATAAATATTATTGAAGG
TAAAGATTTAAAAGGATTAGATAGTGGTGGTGTTAGTGATTGTTATGTTAAATTTAAATG
TGGCCCAATCTCAGCCAAAACAGAAGTAATTAAAAAATCAACAAGCCCAATTTGGAATTA
TATGATTAATATTGGAAATGTTGAAGAGAATACATTATTACAATTTGAATGTTTTGATTG
GGAGAGAATAGGTAATAATAGAACTATGGGAAAAACACAAGCATTTGTTAGTGATTTATC
AAGTGGAGCAAAAAGAAATTTAATGGATCAATGGTTAAGATTAGATACTAAAGGATTCAT
TAGAATTTCATATGAATTTACTCCACCATATCCATTAGAAACAGAATCAACCAATTCACC
AAATTTATCAGTAGTTGGAAATGGTAGTAGTAGTAGTAGTAGTTTAATGTATAATCCAAC
ACCAGTTTATTTTAAACCAATTTTCTTACCAACAATACCATCAGAAACAATAAATAATAA
TAAAAGTACAACATGTCATTTTTTAATTCCAGGATCAGTTTATCAAACTAGACCATTTGT
ATGTGGTGAATTTGTAAATTGTTCATTAGTTTTAAATGTGTTTGAAGCAAG---------
-ATGATAAGAGTTGAGTATCATTTACTTGTGAATTTGGATATCCCAAGTTGTGTTGNCCT
TCGTTTGNAATTACCAATTACCATAGTTCAACCAGACCCAAAGTTTGAAACNCTTCCAAA
TCCATTGACTGAAATTGGTAATTTACCACGTTACGTTAAAGATTGGTCAATTAAAAATTT
CCATAGTTGGGTTCTATTTAAAAAACAATGTCCAGATGTGATGGCTTTGAATCCGGAATT
CTATCAATATAATCTNTCTGGCTCTGATTTAATGCAACTTCCAACGGAAACCNTCTATTC
AATATTCAAAGGAGCCGGTCCAAGGACTCAAGAATTGGTTAATGATTTACAATCTCAAAT
CTTTGAAATTAAATTGGTTAGAAATTTCCTTAAAGAACTTCAACTTTCAAATTTNATAGA
TTACTTTGAAAAACAAACTATCACTTGGGATA
Length of connected seq. 1102
Full length Seq ID -
Full length Seq. -
Length of full length seq. -