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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF420
Library VH
(Link to library)
Clone ID VHF420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11380-1
Original site URL
Representative seq. ID VHF420P
(Link to Original site)
Representative DNA sequence 
>VHF420 (VHF420Q) /CSM/VH/VHF4-A/VHF420Q.Seq.d/
TAATCAATATAGACAAGAATATTTAATTGAATTTACTTTTTCTGGTGTTATTAATTCTCA
TATCAATAATAATAATAATCCAGTTTCTTCAATTACTTCATCATTTAATAAACTTAATAT
TATACCAACACCAGTAGCTGCAGTAGAACCAAAAAAGAGAACAAAAGAAGCAGTAGCTTC
AGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCACCAACATC
AGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAGAATCATC
AATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATAAATCAAT
TTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATCGTAATGA
TTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAACCAACCAC
CTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAAAACAACA
TTCATTTTCAAATGATATCAAGTTXXXXXXXXXXGTGGTTTTGGTAGTACTGNTCAATCA
TTTGGAGGACCAGGTCAATCATTTGGAGGTCCAGGTCAATCATTCGGTCCAAAACCAATT
GCAAGTGGTGGTTTTGGTAGTACTGNTATACCATTTGGAGGACCAGGTCAATCATTTGGA
GGATCGGNTACAAGTGGTGGCTTTGGTAGCACTGNTCAATCATTTGGAGGTCCAAAACCA
ACCACAATTGGAAGCAGTGGTTTTGGTAGTACTGCTGTATCATTTGGAGGACCAGGTCAA
CCATTTGGAGGATCGGCCACAAGTGGTGGTTTTGGATCATCAACACCACAATCAACTCCA
GNTTTTCCAAGTTCATTTGGAATTGGAGGTAAATTTGCTGCTAAAATTCCACCATCAGCN
TCTATCCNTGATAGTGGTTTTGTCCATCTTGCTTCAAACATATCTGCAACTCCAACTGGT
TTATTCAGCAATACCCAACATTNTATAAAAAATATTCCACAAAATATGGGTGGTAGTAGT
GTATCAAACGTTTATCTTTCTATTGATAAACNTGCCAC
sequence update 2002.10.25
Translated Amino Acid sequence 
NQYRQEYLIEFTFSGVINSHINNNNNPVSSITSSFNKLNIIPTPVAAVEPKKRTKEAVAS
VPIASISTFVPLQVPTPPTSVFFPTTTTTTPVATTNLESSMKFNEFVTSFNNISIGDKSI
YQEDSTENEYRKLFVNNRNDSKLNNLYLHCEKVFKSKPTTSELPNVNGVDCIMGFNAKQH
SFSNDIK---

---GFGSTXQSFGGPGQSFGGPGQSFGPKPIASGGFGSTXIPFGGPGQSFGGSXTSGGFG
STXQSFGGPKPTTIGSSGFGSTAVSFGGPGQPFGGSATSGGFGSSTPQSTPXFPSSFGIG
GKFAAKIPPSASIXDSGFVHLASNISATPTGLFSNTQHXIKNIPQNMGGSSVSNVYLSID
KXA
Translated Amino Acid sequence (All Frames) 
Frame A:
*si*trifn*iyffwcy*fsyq****ssffnyfii**t*yytntsscsrtkkenkrsssf
ssnsiniyicsftstnttnisilpnnnnnntgchnkfriinei**icdii**yfnw**in
lsrrfn*k*i*kiick*s**fkie*fiftl*kgi*k*tnhl*itkcewcrlyygiqcktt
fifk*yqv---

---vvlvvlxnhledqvnhlevqvnhsvqnqlqvvvlvvlxyhledqvnhledrxqvval
valxnhlevqnqpqleavvlvvllyhledqvnhledrpqvvvldhqhhnqlqxfqvhlel
evnlllkfhhqxlsxivvlsillqtylqlqlvysaipnix*kifhkiwvvvvyqtfifll
inxp

Frame B:
NQYRQEYLIEFTFSGVINSHINNNNNPVSSITSSFNKLNIIPTPVAAVEPKKRTKEAVAS
VPIASISTFVPLQVPTPPTSVFFPTTTTTTPVATTNLESSMKFNEFVTSFNNISIGDKSI
YQEDSTENEYRKLFVNNRNDSKLNNLYLHCEKVFKSKPTTSELPNVNGVDCIMGFNAKQH
SFSNDIK---

---wfw*yxsiiwrtrsiiwrsrsiirsktnckwwfw*yxytiwrtrsiiwrigykwwlw
*hxsiiwrsktnhnwkqwfw*ycciiwrtrstiwrighkwwfwiinttinsxfskfiwnw
r*icc*nstisxyp**wfcpscfkhicnsnwfiqqyptxykkystkygw**cikrlsfy*
*tch

Frame C:
inidkni*lnllflvllilisiiiiiqflqllhhlinlilyqhq*lq*nqkreqkkq*lq
fq*hqylhlflykyqhhqhqyssqqqqqqhrlpqqi*nhq*nlmnl*hhliifqlvinqf
ikkiqlkmnienyl*iivmiqn*iiyiyivkrylkvnqpplnyqm*mvsivlwdsmqnni
hfqmiss---

---GFGSTXQSFGGPGQSFGGPGQSFGPKPIASGGFGSTXIPFGGPGQSFGGSXTSGGFG
STXQSFGGPKPTTIGSSGFGSTAVSFGGPGQPFGGSATSGGFGSSTPQSTPXFPSSFGIG
GKFAAKIPPSASIXDSGFVHLASNISATPTGLFSNTQHXIKNIPQNMGGSSVSNVYLSID
KXA
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF420 (VHF420Q) /CSM/VH/VHF4-A/VHF420Q.Seq.d/                       1566   0.0
SHF635 (SHF635Q) /CSM/SH/SHF6-B/SHF635Q.Seq.d/                        969   0.0
VHK513 (VHK513Q) /CSM/VH/VHK5-A/VHK513Q.Seq.d/                        965   0.0
SHF132 (SHF132Q) /CSM/SH/SHF1-B/SHF132Q.Seq.d/                        963   0.0
VHD643 (VHD643Q) /CSM/VH/VHD6-B/VHD643Q.Seq.d/                        904   0.0
VHO252 (VHO252Q) /CSM/VH/VHO2-C/VHO252Q.Seq.d/                        902   0.0
AHH474 (AHH474Q) /CSM/AH/AHH4-D/AHH474Q.Seq.d/                        755   0.0
VHI446 (VHI446Q) /CSM/VH/VHI4-B/VHI446Q.Seq.d/                        720   0.0
VHD142 (VHD142Q) /CSM/VH/VHD1-B/VHD142Q.Seq.d/                        581   e-165
VHK243 (VHK243Q) /CSM/VH/VHK2-B/VHK243Q.Seq.d/                        404   e-111
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439632) Dictyostelium discoideum cDNA clone:ddv41h06, 3' ...  1023   0.0    1
(BJ421221) Dictyostelium discoideum cDNA clone:ddv41h06, 5' ...   581   0.0    2
(BJ419803) Dictyostelium discoideum cDNA clone:ddv37c11, 5' ...   581   0.0    2
(BJ443169) Dictyostelium discoideum cDNA clone:ddv52i03, 3' ...   963   0.0    1
(BJ406452) Dictyostelium discoideum cDNA clone:dds35e10, 3' ...   696   0.0    2
(BJ406188) Dictyostelium discoideum cDNA clone:dds34o07, 3' ...   961   0.0    1
(BJ438732) Dictyostelium discoideum cDNA clone:ddv38e12, 3' ...   902   0.0    1
(BJ445474) Dictyostelium discoideum cDNA clone:ddv59g14, 3' ...   821   0.0    3
(BJ394264) Dictyostelium discoideum cDNA clone:dds34o07, 5' ...   581   0.0    2
(BJ334282) Dictyostelium discoideum cDNA clone:dda45d20, 5' ...   581   0.0    2
dna update 2008.10.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,393,853,509
protein update 2009. 7. 4
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VHF420 is cyt
5' end seq. ID VHF420F
5' end seq. 
>VHF420F.Seq
TAATCAATATAGACAAGAATATTTAATTGAATTTACTTTTTCTGGTGTTATTAATTCTCA
TATCAATAATAATAATAATCCAGTTTCTTCAATTACTTCATCATTTAATAAACTTAATAT
TATACCAACACCAGTAGCTGCAGTAGAACCAAAAAAGAGAACAAAAGAAGCAGTAGCTTC
AGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCACCAACATC
AGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAGAATCATC
AATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATAAATCAAT
TTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATCGTAATGA
TTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAACCAACCAC
CTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAAAACAACA
TTCATTTTCAAATGATATCAAGTTNNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID VHF420Z
3' end seq. 
>VHF420Z.Seq
NNNNNNNNNNGTGGTTTTGGTAGTACTGNTCAATCATTTGGAGGACCAGGTCAATCATTT
GGAGGTCCAGGTCAATCATTCGGTCCAAAACCAATTGCAAGTGGTGGTTTTGGTAGTACT
GNTATACCATTTGGAGGACCAGGTCAATCATTTGGAGGATCGGNTACAAGTGGTGGCTTT
GGTAGCACTGNTCAATCATTTGGAGGTCCAAAACCAACCACAATTGGAAGCAGTGGTTTT
GGTAGTACTGCTGTATCATTTGGAGGACCAGGTCAACCATTTGGAGGATCGGCCACAAGT
GGTGGTTTTGGATCATCAACACCACAATCAACTCCAGNTTTTCCAAGTTCATTTGGAATT
GGAGGTAAATTTGCTGCTAAAATTCCACCATCAGCNTCTATCCNTGATAGTGGTTTTGTC
CATCTTGCTTCAAACATATCTGCAACTCCAACTGGTTTATTCAGCAATACCCAACATTNT
ATAAAAAATATTCCACAAAATATGGGTGGTAGTAGTGTATCAAACGTTTATCTTTCTATT
GATAAACNTGCCAC
Length of 3' end seq. 554
Connected seq. ID VHF420P
Connected seq. 
>VHF420P.Seq
TAATCAATATAGACAAGAATATTTAATTGAATTTACTTTTTCTGGTGTTATTAATTCTCA
TATCAATAATAATAATAATCCAGTTTCTTCAATTACTTCATCATTTAATAAACTTAATAT
TATACCAACACCAGTAGCTGCAGTAGAACCAAAAAAGAGAACAAAAGAAGCAGTAGCTTC
AGTTCCAATAGCATCAATATCTACATTTGTTCCTTTACAAGTACCAACACCACCAACATC
AGTATTCTTCCCAACAACAACAACAACAACACCGGTTGCCACAACAAATTTAGAATCATC
AATGAAATTTAATGAATTTGTGACATCATTTAATAATATTTCAATTGGTGATAAATCAAT
TTATCAAGAAGATTCAACTGAAAATGAATATAGAAAATTATTTGTAAATAATCGTAATGA
TTCAAAATTGAATAATTTATATTTACATTGTGAAAAGGTATTTAAAAGTAAACCAACCAC
CTCTGAATTACCAAATGTGAATGGTGTCGATTGTATTATGGGATTCAATGCAAAACAACA
TTCATTTTCAAATGATATCAAGTT----------GTGGTTTTGGTAGTACTGNTCAATCA
TTTGGAGGACCAGGTCAATCATTTGGAGGTCCAGGTCAATCATTCGGTCCAAAACCAATT
GCAAGTGGTGGTTTTGGTAGTACTGNTATACCATTTGGAGGACCAGGTCAATCATTTGGA
GGATCGGNTACAAGTGGTGGCTTTGGTAGCACTGNTCAATCATTTGGAGGTCCAAAACCA
ACCACAATTGGAAGCAGTGGTTTTGGTAGTACTGCTGTATCATTTGGAGGACCAGGTCAA
CCATTTGGAGGATCGGCCACAAGTGGTGGTTTTGGATCATCAACACCACAATCAACTCCA
GNTTTTCCAAGTTCATTTGGAATTGGAGGTAAATTTGCTGCTAAAATTCCACCATCAGCN
TCTATCCNTGATAGTGGTTTTGTCCATCTTGCTTCAAACATATCTGCAACTCCAACTGGT
TTATTCAGCAATACCCAACATTNTATAAAAAATATTCCACAAAATATGGGTGGTAGTAGT
GTATCAAACGTTTATCTTTCTATTGATAAACNTGCCAC
Length of connected seq. 1108
Full length Seq ID -
Full length Seq. -
Length of full length seq. -