VHF414
Library VH
(Link to library)
Clone ID VHF414
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11293-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF414 (VHF414Q) /CSM/VH/VHF4-A/VHF414Q.Seq.d/
XXXXXXXXXXTGAACGTTCACCATTAACCAGTGGTCCAATTCGTCAAATCTTTGAAAAAC
CATTTACAATTATTTATGGTACAAATTCAACAAATATTGATTTATTCCAATGGGGTTCAG
TTTTTATTTCAAACTTTTATAATACCTATGGACGTGGTTCACCAAATATTTTAGCAGATA
TTGATTTCGTTGAACCAGAGATTTGTTCCTCAAATGATAATTACATTTTGTTGGGTAATA
GTTTTCAAAATTTAGTTACCTCAAAATATCAATCATTATTACCAGTGGTTTTTAATTGGG
ATAAATNTTTTTCGGTGGGTCCATCCTNTCCATAATNTTATCCTGGTACTGGTATTTTAT
TTTTAGCTCCAAATCCATGTGGTCAAGGTTTAATTTTAGTAGTTGCTGGTTATGATGATC
AAGGTTTTAATAATGCATTACATTCAATTCCACAACGTTCAGGTGTTTTAGTTCCTGATT
TTATGGTAGTTGGTAATGATATTTGGAAAGGTGCTGGTGGTATCATTTCAACTGGCTTTT
GGGATCCAAANTGGTTTGTTTCTTTAGATTCTTCTTATTTCGGTTTTACTCCATTTTAAA
AAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---ERSPLTSGPIRQIFEKPFTIIYGTNSTNIDLFQWGSVFISNFYNTYGRGSPNILADI
DFVEPEICSSNDNYILLGNSFQNLVTSKYQSLLPVVFNWDKXFSVGPSXP*xypgtgilf
lapnpcgqglilvvagyddqgfnnalhsipqrsgvlvpdfmvvgndiwkgaggiistgfw
dpxwfvsldssyfgftpf*kk


Translated Amino Acid sequence (All Frames)
Frame A:
---ERSPLTSGPIRQIFEKPFTIIYGTNSTNIDLFQWGSVFISNFYNTYGRGSPNILADI
DFVEPEICSSNDNYILLGNSFQNLVTSKYQSLLPVVFNWDKXFSVGPSXP*xypgtgilf
lapnpcgqglilvvagyddqgfnnalhsipqrsgvlvpdfmvvgndiwkgaggiistgfw
dpxwfvsldssyfgftpf*kk


Frame B:
---nvhh*pvvqfvkslknhlqlfmvqiqqiliysngvqflfqtfiipmdvvhqif*qil
islnqrfvpqmiitfcwvivfki*lpqninhyyqwfliginxfrwvhpxhnxilvlvfyf
*lqihvvkv*f**llvmmikvlimhyiqfhnvqvf*flilw*lvmifgkvlvvsfqlafg
iqxglfl*illisvllhfkk


Frame C:
---tftinqwsnssnl*ktiynylwykfnky*fipmgfsfyfkll*ylwtwftkyfsry*
fr*trdlflk**lhfvg**fskfsylkisiiitsgf*lg*xffggsilsixlswywyfif
ssksmwsrfnfsscwl**srf**citfnsttfrcfss*fygsw**ylercwwyhfnwllg
skxvcffrfflfrfysilkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF414 (VHF414Q) /CSM/VH/VHF4-A/VHF414Q.Seq.d/ 1140 0.0
SHF541 (SHF541Q) /CSM/SH/SHF5-B/SHF541Q.Seq.d/ 1128 0.0
SHJ695 (SHJ695Q) /CSM/SH/SHJ6-D/SHJ695Q.Seq.d/ 1124 0.0
SHD607 (SHD607Q) /CSM/SH/SHD6-A/SHD607Q.Seq.d/ 1124 0.0
AHE379 (AHE379Q) /CSM/AH/AHE3-D/AHE379Q.Seq.d/ 1118 0.0
SHC323 (SHC323Q) /CSM/SH/SHC3-A/SHC323Q.Seq.d/ 1116 0.0
CHR394 (CHR394Q) /CSM/CH/CHR3-D/CHR394Q.Seq.d/ 1100 0.0
CHH192 (CHH192Q) /CSM/CH/CHH1-D/CHH192Q.Seq.d/ 1100 0.0
AHI334 (AHI334Q) /CSM/AH/AHI3-B/AHI334Q.Seq.d/ 1066 0.0
VSH673 (VSH673Q) /CSM/VS/VSH6-D/VSH673Q.Seq.d/ 38 0.15

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439648) Dictyostelium discoideum cDNA clone:ddv41l04, 3' ... 1140 0.0 1
(BJ406433) Dictyostelium discoideum cDNA clone:dds35a11, 3' ... 1128 0.0 1
(BJ407871) Dictyostelium discoideum cDNA clone:dds43m24, 3' ... 1124 0.0 1
(BJ405278) Dictyostelium discoideum cDNA clone:dds31m02, 3' ... 1124 0.0 1
(BJ350459) Dictyostelium discoideum cDNA clone:dda39n19, 3' ... 1118 0.0 1
(BJ404330) Dictyostelium discoideum cDNA clone:dds28n05, 3' ... 1116 0.0 1
(BJ386021) Dictyostelium discoideum cDNA clone:ddc56l23, 3' ... 1100 0.0 1
(BJ380047) Dictyostelium discoideum cDNA clone:ddc36g23, 3' ... 1096 0.0 1
(BJ352601) Dictyostelium discoideum cDNA clone:dda47d09, 3' ... 1023 0.0 2
(EH016268) USDA-FP_188785 Lysiphlebus testaceipes adult whol... 52 0.024 1
dna update 2008.10.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo... 57 4e-07
EU929196_1(EU929196|pid:none) Streptococcus agalactiae strain 56... 34 2.8
EU929194_1(EU929194|pid:none) Streptococcus agalactiae strain 55... 34 2.8
EU929191_1(EU929191|pid:none) Streptococcus agalactiae strain 54... 34 2.8
EU929189_1(EU929189|pid:none) Streptococcus agalactiae strain 54... 34 2.8
EU929217_1(EU929217|pid:none) Streptococcus agalactiae strain 59... 34 2.8
EU929133_1(EU929133|pid:none) Streptococcus agalactiae strain AB... 34 2.8
EU929205_1(EU929205|pid:none) Streptococcus agalactiae strain 56... 34 2.8
EU929211_1(EU929211|pid:none) Streptococcus agalactiae strain 21... 34 2.8
EU929199_1(EU929199|pid:none) Streptococcus agalactiae strain 56... 34 2.8
protein update 2009. 3. 3
PSORT

psg: 0.66 gvh: 0.36 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHF414 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF414Z
3' end seq.
>VHF414Z.Seq
NNNNNNNNNNTGAACGTTCACCATTAACCAGTGGTCCAATTCGTCAAATCTTTGAAAAAC
CATTTACAATTATTTATGGTACAAATTCAACAAATATTGATTTATTCCAATGGGGTTCAG
TTTTTATTTCAAACTTTTATAATACCTATGGACGTGGTTCACCAAATATTTTAGCAGATA
TTGATTTCGTTGAACCAGAGATTTGTTCCTCAAATGATAATTACATTTTGTTGGGTAATA
GTTTTCAAAATTTAGTTACCTCAAAATATCAATCATTATTACCAGTGGTTTTTAATTGGG
ATAAATNTTTTTCGGTGGGTCCATCCTNTCCATAATNTTATCCTGGTACTGGTATTTTAT
TTTTAGCTCCAAATCCATGTGGTCAAGGTTTAATTTTAGTAGTTGCTGGTTATGATGATC
AAGGTTTTAATAATGCATTACATTCAATTCCACAACGTTCAGGTGTTTTAGTTCCTGATT
TTATGGTAGTTGGTAATGATATTTGGAAAGGTGCTGGTGGTATCATTTCAACTGGCTTTT
GGGATCCAAANTGGTTTGTTTCTTTAGATTCTTCTTATTTCGGTTTTACTCCATTTTAAA
AAAAA
Length of 3' end seq. 605
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -