AFN790
Library AF
(Link to library)
Clone ID AFN790
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID AFN790Z
(Link to Original site)
Representative DNA sequence
>AFN790 (AFN790Q) /CSM/AF/AFN7-D/AFN790Q.Seq.d/
XXXXXXXXXXTCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATG
TACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCC
TCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACA
TCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTG
AAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCG
TTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTG
GTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACC
GTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTA
TCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCTGCCGATACCT
ATCT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYI
NDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIG
FPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTY


Translated Amino Acid sequence (All Frames)
Frame A:
---LDECDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYI
NDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIG
FPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFGRGIDIERVNVVINYDMAESADTY


Frame B:
---lmnvipcsnhwi*ermykrssnssqptnkl*cfqlpslipfvqsvrsl*tihwksts
mmvvnslsmvfnnttyqslknkriknslnswih*tlikplfssnlldvlmp*irsskilv
shpsvfivtsikrivsnntvnsktlnlvswlplislvvvsilnvsmsssttiwlnlpipi


Frame C:
---**m*yhariigyekgctkdlqthpsqqtsydvfsypl*yhssnl*evyeqsignlhq
*w**thspwsstilrtnh*rtke*kth*tlgfirl*ssryfrqic*tc*clk*dpprywf
pihlyss*prskgsyrtip*iqkl*isyhgch*ylwswyry*tcqcrhqlryg*icryls


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/ 1059 0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/ 1059 0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/ 1059 0.0
CFJ109 (CFJ109Q) /CSM/CF/CFJ1-A/CFJ109Q.Seq.d/ 1059 0.0
AFN790 (AFN790Q) /CSM/AF/AFN7-D/AFN790Q.Seq.d/ 1059 0.0
AFL695 (AFL695Q) /CSM/AF/AFL6-D/AFL695Q.Seq.d/ 1059 0.0
AFL574 (AFL574Q) /CSM/AF/AFL5-D/AFL574Q.Seq.d/ 1059 0.0
AFJ621 (AFJ621Q) /CSM/AF/AFJ6-A/AFJ621Q.Seq.d/ 1059 0.0
AFG357 (AFG357Q) /CSM/AF/AFG3-C/AFG357Q.Seq.d/ 1059 0.0
AFE253 (AFE253Q) /CSM/AF/AFE2-C/AFE253Q.Seq.d/ 1059 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL408654|AL408654.1 T7 end of clone AV0AA009H09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 38 5e-10 4
AX488925|AX488925.1 Sequence 6225 from Patent WO02053728. 40 6e-10 5
BF071471|BF071471.1 st59b09.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-857 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-09 2
AW759959|AW759959.1 sl56c07.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-5317 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 56 9e-09 2
BI742220|BI742220.1 kt91h02.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HE47_CAEEL Q18212 PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG. [1] ;, mRNA sequence. 38 4e-08 4
BI974435|BI974435.1 saj01e10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-9068 5' similar to TR:Q9ZS06 Q9ZS06 RNA HELICASE ;, mRNA sequence. 52 1e-07 2
Z74132|Z74132.1 S.cerevisiae chromosome IV reading frame ORF YDL084w. 42 2e-07 4
AI966749|AI966749.1 sc57c05.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-513 5' similar to TR:O13792 O13792 PUTATIVE ATP-DEPENDENT RNA HELICASE C17G6.14C. ;, mRNA sequence. 48 1e-06 2
BF936994|BF936994.1 EST460049 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCE26 5' end, mRNA sequence. 64 2e-06 1
BQ826216|0 44 2e-06 3
dna update 2003. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O13792) RecName: Full=ATP-dependent RNA helicase uap56; ... 250 2e-65
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia... 250 2e-65
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD... 248 7e-65
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235. 247 2e-64
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235.... 246 2e-64
AJ428513_1(AJ428513|pid:none) Chironomus tentans mRNA for HEL pr... 246 3e-64
AM920437_2400(AM920437|pid:none) Penicillium chrysogenum Wiscons... 246 3e-64
(A1DL85) RecName: Full=ATP-dependent RNA helicase sub2; ... 246 3e-64
(A1CMQ7) RecName: Full=ATP-dependent RNA helicase sub2; ... 246 3e-64
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM... 246 3e-64
protein update 2009. 4.25
PSORT

psg: 0.75 gvh: 0.46 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFN790 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFN790Z
3' end seq.
>AFN790Z.Seq
----------TCTTGATGAATGTGATACCATGCTCGAATCATTGGATATGAGAAAGGATG
TACAAAAGATCTTCAAACTCATCCCAGCCAACAAACAAGTTATGATGTTTTCAGCTACCC
TCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAATCCATTGGAAATCTACA
TCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATACTACGTACCAATCACTG
AAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATTAGACTTTAATCAAGCCG
TTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAAGATCCTCCAAGATATTG
GTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGATCGTATCGAACAATACC
GTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAATATCTTTGGTCGTGGTA
TCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGCTGAATCTGCCGATACCT
ATCT
Length of 3' end seq. 534
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -