VHF376
Library VH
(Link to library)
Clone ID VHF376
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF376 (VHF376Q) /CSM/VH/VHF3-D/VHF376Q.Seq.d/
XXXXXXXXXXAGCAGGTTATCATAGACTTTGGGNTCATAAGGCTTATAGTGCAGTTTTAC
CAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGT
GGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAG
CTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGA
AAATCGGTAGAGCAAACATTGACGACNTTAACGCCGATCCATGGGTTATGTGGCAACATA
AACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTT
TAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTANTCTGGTGTACTTCGTCTCGTTACAG
TTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACG
ATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTT
ATCATAACTTCCATCATGAATTCCCAAATGACTATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---AGYHRLWXHKAYSAVLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSA
SLGFWHSHFIWLMFKQDPKKIGRANIDDXNADPWVMWQHKHYIKIATFMGLVFPTLVAGL
GWGDWAGGYFXSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGY
HNFHHEFPNDY


Translated Amino Acid sequence (All Frames)
Frame A:
---AGYHRLWXHKAYSAVLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSA
SLGFWHSHFIWLMFKQDPKKIGRANIDDXNADPWVMWQHKHYIKIATFMGLVFPTLVAGL
GWGDWAGGYFXSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGY
HNFHHEFPNDY


Frame B:
---qviidfgxirlivqfyqfvlsccylvqvlskvhvvggqeiivliivisilikihiql
hwvsgipisfg*csnkiqrksveqtlttltpihglcgninitlkspllwvsfsqhw*lv*
vgviglvvisxlvyfvslqfniphswsihwlii*vtlhtmmnilqriql*lly*hlvkvi
itsimnsqmti


Frame C:
---rls*tlgs*gl*csftssyylvaiwcrccrrfmslvvkrsscssslsry**rsifsf
igflafpfhlvnvqtrskenr*skh*rx*rrsmgyvat*tlh*nrhfygsrfpnigswfr
lg*lgwwlflxwctssrysstfhilgqfigslfr*lsir**tyskgfscdcyiniw*rls
*lps*ipk*l


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1104 0.0
VHF376 (VHF376Q) /CSM/VH/VHF3-D/VHF376Q.Seq.d/ 1104 0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/ 1096 0.0
VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/ 1051 0.0
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/ 1039 0.0
VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/ 1029 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 993 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 989 0.0
FC-AD05 (FC-AD05Q) /CSM/FC/FC-AD/FC-AD05Q.Seq.d/ 977 0.0
VHL555 (VHL555Q) /CSM/VH/VHL5-C/VHL555Q.Seq.d/ 955 0.0

own update 2002.12.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 1104 0.0 1
(BJ446136) Dictyostelium discoideum cDNA clone:ddv61c22, 3' ... 1104 0.0 1
(BJ439848) Dictyostelium discoideum cDNA clone:ddv41h19, 3' ... 1104 0.0 1
(BJ443443) Dictyostelium discoideum cDNA clone:ddv52n22, 3' ... 1096 0.0 1
(BJ446071) Dictyostelium discoideum cDNA clone:ddv61f15, 3' ... 1051 0.0 1
(BJ441909) Dictyostelium discoideum cDNA clone:ddv48a10, 3' ... 1039 0.0 1
(BJ428760) Dictyostelium discoideum cDNA clone:ddv1k06, 3' e... 1029 0.0 1
(BJ416215) Dictyostelium discoideum cDNA clone:ddv25h08, 5' ... 993 0.0 1
(BJ439308) Dictyostelium discoideum cDNA clone:ddv40e04, 3' ... 989 0.0 1
(C23730) Dictyostelium discoideum gamete cDNA, clone FC-AD05. 955 0.0 2
dna update 2008.10.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 407 e-112
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura... 289 4e-77
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 289 4e-77
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 285 5e-76
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 284 1e-75
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 283 2e-75
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 282 5e-75
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 280 2e-74
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 279 3e-74
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 276 3e-73
protein update 2009. 7. 2
PSORT

psg: 0.87 gvh: 0.74 alm: 0.32 top: 0.27 tms: 0.07 mit: 0.33 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: extracellular, including cell wall
32.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for VHF376 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF376Z
3' end seq.
>VHF376Z.Seq
NNNNNNNNNNAGCAGGTTATCATAGACTTTGGGNTCATAAGGCTTATAGTGCAGTTTTAC
CAGTTCGTATTATCTTGTTGCTATTTGGTGCAGGTGCTGTCGAAGGTTCATGTCGTTGGT
GGTCAAGAGATCATCGTGCTCATCATCGTTATCTCGATACTGATAAAGATCCATATTCAG
CTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAACAAGATCCAAAGA
AAATCGGTAGAGCAAACATTGACGACNTTAACGCCGATCCATGGGTTATGTGGCAACATA
AACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACATTGGTAGCTGGTT
TAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTANTCTGGTGTACTTCGTCTCGTTACAG
TTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGTGACTCTCCATACG
ATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACATTTGGTGAAGGTT
ATCATAACTTCCATCATGAATTCCCAAATGACTATA
Length of 3' end seq. 576
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -