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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF373
Library VH
(Link to library)
Clone ID VHF373
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHF373P
(Link to Original site)
Representative DNA sequence 
>VHF373 (VHF373Q) /CSM/VH/VHF3-D/VHF373Q.Seq.d/
ATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATG
TGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTA
CCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAA
GTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGAC
ATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAA
CCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATT
CTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAA
TATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCT
CGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATC
ACTATTTCATCTCATTTAACTGXXXXXXXXXXTTCAGATCCTTTGTTAAGAGATAAAGTA
ACCACTAAAATTGGGTATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATT
CGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGC
TACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAA
ATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGA
GGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAG
TTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCAC
CAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCAT
TGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTT
CAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTAC
AATTAATTCAAATTGGTTCAAAGCTTTAATCAAGATTTATCAAATTGGATTCAATCAAAA
TAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTTAATAATTGATAGTNATAAAAAA
AAAGAGACGAAAACTAAAATAAACATCAAATTATTGTTTTCCTTTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
IISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGK
VDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTI
LSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKI
TISSHLT---

---SDPLLRDKVTTKIGYVG*c*yrc*m*ekirsfqsrlfkftirysfystcynrkeww*
s*stnhh*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflypp
kscssirlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc
*sfn*trfrngyn*fklvqsfnqdlsnwiqsk*k*nllq*kifvliidsxkkketktkin
ikllfsf*
Translated Amino Acid sequence (All Frames) 
Frame A:
IISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVFSGK
VDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTENTI
LSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFNIKI
TISSHLT---

---frsfvkr*snh*nwvcwvmlisllnvrkdsklskqtlqvyhqifvlqyllqs*rmvv
klinksslinilnll*slkriltfwyllwlqkrnwlkkpsislylhplevkiviwfslps
qivfvnslgltspktlikstkhlktllclvvslvvvsplkwmilntmksstfskiiqfql
livqlnki*kwlqliqigskl*srfikldsikikiksltmkdlcfnn**x*kkrden*nk
hqiivfllk

Frame B:
*fhlfililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilysaak
ltlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqkiqf
splislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlslilks
lfhli*l---

---SDPLLRDKVTTKIGYVG*c*yrc*m*ekirsfqsrlfkftirysfystcynrkeww*
s*stnhh*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflypp
kscssirlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc
*sfn*trfrngyn*fklvqsfnqdlsnwiqsk*k*nllq*kifvliidsxkkketktkin
ikllfsf*

Frame C:
nftclf*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciqrqs
*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyrkyns
lh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y*nh
yfisfn---

---qilc*eik*plklgmlgdadivaeckkrfeafkadssslpsdirstvlativkngge
adqqiiidqylksslvaeknsyllvlalapkeelvekalnfalspsvrsqdsymvfftlp
nrvrqfawayltknfnqinetfknsplfgriigscltskmddsqynevvnffkdhpvpia
drsikqdlemvtinsnwfkalikiyqigfnqnknkisynerslf**livikkkrrklk*t
snycfpfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF373 (VHF373Q) /CSM/VH/VHF3-D/VHF373Q.Seq.d/                       2436   0.0
VHP167 (VHP167Q) /CSM/VH/VHP1-C/VHP167Q.Seq.d/                       1350   0.0
VHD415 (VHD415Q) /CSM/VH/VHD4-A/VHD415Q.Seq.d/                       1340   0.0
AHO535 (AHO535Q) /CSM/AH/AHO5-B/AHO535Q.Seq.d/                       1336   0.0
AHF562 (AHF562Q) /CSM/AH/AHF5-C/AHF562Q.Seq.d/                       1336   0.0
VHK646 (VHK646Q) /CSM/VH/VHK6-B/VHK646Q.Seq.d/                       1334   0.0
VHJ580 (VHJ580Q) /CSM/VH/VHJ5-D/VHJ580Q.Seq.d/                       1334   0.0
VHA645 (VHA645Q) /CSM/VH/VHA6-B/VHA645Q.Seq.d/                       1334   0.0
AHJ216 (AHJ216Q) /CSM/AH/AHJ2-A/AHJ216Q.Seq.d/                       1332   0.0
AHM590 (AHM590Q) /CSM/AH/AHM5-D/AHM590Q.Seq.d/                       1328   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439829) Dictyostelium discoideum cDNA clone:ddv41b19, 3' ...  1346   0.0    2
(BJ446808) Dictyostelium discoideum cDNA clone:ddv63l20, 3' ...  1110   0.0    5
(BJ446740) Dictyostelium discoideum cDNA clone:ddv63o15, 3' ...  1110   0.0    4
(BJ446678) Dictyostelium discoideum cDNA clone:ddv63b16, 3' ...  1110   0.0    4
(BJ446593) Dictyostelium discoideum cDNA clone:ddv63p01, 3' ...  1110   0.0    3
(BJ446563) Dictyostelium discoideum cDNA clone:ddv63j01, 3' ...  1110   0.0    5
(BJ446279) Dictyostelium discoideum cDNA clone:ddv62a11, 3' ...  1110   0.0    4
(BJ446274) Dictyostelium discoideum cDNA clone:ddv62p02, 3' ...  1110   0.0    4
(BJ446256) Dictyostelium discoideum cDNA clone:ddv62k06, 3' ...  1110   0.0    4
(BJ446156) Dictyostelium discoideum cDNA clone:ddv61g23, 3' ...  1110   0.0    5
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   189   5e-47
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   140   8e-32
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   140   8e-32
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   140   8e-32
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   123   1e-26
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   122   2e-26
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   121   6e-26
AP005572_11(AP005572|pid:none) Oryza sativa Japonica Group genom...   120   1e-25
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   118   4e-25
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   116   2e-24
protein update 2009. 7. 2
PSORT 

 psg: 0.87  gvh: 0.34  alm: 0.41  top: 0.57  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for VHF373 is cyt
5' end seq. ID VHF373F
5' end seq. 
>VHF373F.Seq
ATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATG
TGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTA
CCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAA
GTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGAC
ATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAA
CCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATT
CTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAA
TATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCT
CGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATC
ACTATTTCATCTCATTTAACTGNNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID VHF373Z
3' end seq. 
>VHF373Z.Seq
NNNNNNNNNNTTCAGATCCTTTGTTAAGAGATAAAGTAACCACTAAAATTGGGTATGTTG
GGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCT
TCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGT
GAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAG
AATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTC
AATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTC
CCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAAC
GAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAA
ATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATT
GCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAA
GCTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAAT
GAAAGATCTTTGTTTTAATAATTGATAGTNATAAAAAAAAAGAGACGAAAACTAAAATAA
ACATCAAATTATTGTTTTCCTTTTAAAA
Length of 3' end seq. 748
Connected seq. ID VHF373P
Connected seq. 
>VHF373P.Seq
ATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTTGAAAAAATG
TGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGATAATATCGTA
CCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAA
GTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCATTCAATTGAC
ATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAA
CCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAAAATACAATT
CTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAA
TATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCT
CGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATC
ACTATTTCATCTCATTTAACTG----------TTCAGATCCTTTGTTAAGAGATAAAGTA
ACCACTAAAATTGGGTATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATT
CGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGC
TACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAA
ATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGA
GGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAG
TTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCAC
CAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCAT
TGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTT
CAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTAC
AATTAATTCAAATTGGTTCAAAGCTTTAATCAAGATTTATCAAATTGGATTCAATCAAAA
TAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTTAATAATTGATAGTNATAAAAAA
AAAGAGACGAAAACTAAAATAAACATCAAATTATTGTTTTCCTTTTAAAA
Length of connected seq. 1300
Full length Seq ID -
Full length Seq. -
Length of full length seq. -