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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF368
Library VH
(Link to library)
Clone ID VHF368
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID VHF368P
(Link to Original site)
Representative DNA sequence 
>VHF368 (VHF368Q) /CSM/VH/VHF3-C/VHF368Q.Seq.d/
AAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATT
TTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGT
ACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGA
GAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTCAAAAATTTG
TCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTC
AATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGAATATTCTGA
TTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAGTTTTGGTGA
TAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAATAAAGTTAA
TGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTCATTAGATAA
ACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATTXXXXXXXXXXGAA
GTATATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGGTTCACCAATGGAA
GAATGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAAGATTCTTGAACTC
TTTGGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATG
GCACGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCNCCAAGTGAAGGTGCNCCAGGT
AAATGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCT
GGTATTGTCACTTTAGACAAGACTGCNGACGATGTAATTGTCAAACTTGATAAAAGTAAA
ATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCNTCAATAGATTAATGGTTTACAAA
GCAACTGCAAATATTGATGCTTCAATCAAATTATTCGATGAATATACTCATGTCAATGAA
GAATTCCTCGCCATTAGAGATATAGTTTTGGNTAAAAAGAAACCAAGAAAGGTATTTGTT
CAAGCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCA
ACTCAAGGTATGATCGATTCAATGATCNCCAGATTTGGTAAAGATGATTCTGATATGTTA
TAAAGCTTTTTATTAAATTTCCNAAAAATAAAATAATATAAAATAAAATAAAATAAAATA
AAATAAAATATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
NNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNARESFNLLTE
KEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNIVSEEEYSD
LLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCSELMYSLDK
QVRELGIDGNGISTY---

---EVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKAEDVYYVN
WLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTADDVIVKL
DKSKIRGIGVKAVGDFXNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIVLXKKKPR
KVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMIXRFGKDDSDML*sfllnfxkik*ykik
*nkik*ni
Translated Amino Acid sequence (All Frames) 
Frame A:
kq*q**fl*q*k***f**kilfnk*fnnvstiisnressctkgdsslsfkcs*iiqsinr
erttlcpsy*ccllvgfknlswsniy*kwsnl*slsksflnskfkinccskycf*rrif*
fiiiccnflw*yg*llkfw***iysknfkrkitiny**s****sq*ilg*m**invfir*
tskrigy*w*wyfnl---

---EVYKFGETYDSVFKSLGSPMEECRAECCGIYLSPDEKILELFGFTDPKKAEDVYYVN
WLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTFLRSGIVTLDKTADDVIVKL
DKSKIRGIGVKAVGDFXNRLMVYKATANIDASIKLFDEYTHVNEEFLAIRDIVLXKKKPR
KVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMIXRFGKDDSDML*sfllnfxkik*ykik
*nkik*ni

Frame B:
NNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPVYRLNARESFNLLTE
KEQLYAHHISVACWWGSKICLGQTSIESGPIFNLFQNLFSIQNLKSTVVPNIVSEEEYSD
LLSYAATFYGNMGNYLSFGDSKFIPRISKEKLQLIINKVNDNKVNEYWGKCSELMYSLDK
QVRELGIDGNGISTY---

---kyinlvklmtvfsnhwvhqwknveqnvvvsiyhqmkrflnslvsqiqrklkmstmsi
g*lwhvlvsvhwnfivxqvkvxqvngdklickpdivf*qhsyvlvlsl*trlxtm*lsnl
ikvklevlvlkllvissid*wftkqlqilmlqsnysmnilmsmknssplei*fwxkrnqe
rylfklihisiqmvkfvfkilmtqlkv*siq*spdlvkmilicykafy*isxk*nnik*n
kik*nki*

Frame C:
titiiisitikiiivlikdfiqqii**cqyhhq**riilyqrrfqfiv*mlvnhsiy*qr
knnsmpiilvlpvggvqkfvlvkhllkvvqslisfkifsqfki*nqllfqilflkknili
yyhmlqlfmviwvit*vlvivnlfqefqkknyn*lliklmiiksmnigvnvvn*cih*in
k*enwvlmvmvfqpi---

---si*iw*nl*qcfqiigftngrm*srmlwylfitr*kds*tlwfhrskes*rcllcql
vdygtcwclcigil*sxk*rcxr*metssyasqilyfnniltfwychfrqdcxrcncqt*
*k*n*rywc*scw*fxq*inglqsncky*cfnqiir*iyscq*riprh*rysfg*ketkk
gicsssyisqfkw*slssrf**lnsrydrfndxqiw*r*f*yviklfikfpknkii*nki
k*nkiky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF368 (VHF368Q) /CSM/VH/VHF3-C/VHF368Q.Seq.d/                       2337   0.0
VHA874 (VHA874Q) /CSM/VH/VHA8-D/VHA874Q.Seq.d/                       1314   0.0
VHP234 (VHP234Q) /CSM/VH/VHP2-B/VHP234Q.Seq.d/                       1314   0.0
VHK861 (VHK861Q) /CSM/VH/VHK8-C/VHK861Q.Seq.d/                       1314   0.0
VHI866 (VHI866Q) /CSM/VH/VHI8-C/VHI866Q.Seq.d/                       1314   0.0
VHI773 (VHI773Q) /CSM/VH/VHI7-D/VHI773Q.Seq.d/                       1314   0.0
VHI426 (VHI426Q) /CSM/VH/VHI4-B/VHI426Q.Seq.d/                       1314   0.0
VHH802 (VHH802Q) /CSM/VH/VHH8-A/VHH802Q.Seq.d/                       1314   0.0
VHH757 (VHH757Q) /CSM/VH/VHH7-C/VHH757Q.Seq.d/                       1314   0.0
VHD675 (VHD675Q) /CSM/VH/VHD6-D/VHD675Q.Seq.d/                       1314   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439785) Dictyostelium discoideum cDNA clone:ddv41h17, 3' ...  1320   0.0    1
(BJ445983) Dictyostelium discoideum cDNA clone:ddv61c10, 3' ...  1312   0.0    1
(BJ443339) Dictyostelium discoideum cDNA clone:ddv52j16, 3' ...  1312   0.0    1
(BJ442067) Dictyostelium discoideum cDNA clone:ddv48b19, 3' ...  1312   0.0    1
(BJ442005) Dictyostelium discoideum cDNA clone:ddv48d18, 3' ...  1312   0.0    1
(BJ441614) Dictyostelium discoideum cDNA clone:ddv47d08, 3' ...  1312   0.0    1
(BJ441369) Dictyostelium discoideum cDNA clone:ddv46b15, 3' ...  1312   0.0    1
(BJ441215) Dictyostelium discoideum cDNA clone:ddv46d02, 3' ...  1312   0.0    1
(BJ438891) Dictyostelium discoideum cDNA clone:ddv38e20, 3' ...  1312   0.0    1
(BJ438004) Dictyostelium discoideum cDNA clone:ddv36f01, 3' ...  1312   0.0    1
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3;          EC=3.4.1...   183   1e-44
(Q08225) RecName: Full=Probable dipeptidyl-peptidase 3;         ...   174   4e-43
X91067_8(X91067|pid:none) S.cerevisiae DNA from chromosome XV (c...   174   4e-43
BC043905_1(BC043905|pid:none) Xenopus laevis dipeptidylpeptidase...   174   5e-42
BC077244_1(BC077244|pid:none) Xenopus laevis dipeptidylpeptidase...   174   6e-42
BC075771_1(BC075771|pid:none) Danio rerio dipeptidylpeptidase 3,...   169   2e-40
AK150126_1(AK150126|pid:none) Mus musculus bone marrow macrophag...   167   1e-39
AK031020_1(AK031020|pid:none) Mus musculus adult male thymus cDN...   167   1e-39
BC066817_1(BC066817|pid:none) Mus musculus dipeptidylpeptidase 3...   167   1e-39
AK168195_1(AK168195|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...   167   1e-39
protein update 2009. 7. 2
PSORT 

 psg: 0.38  gvh: 0.27  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for VHF368 is nuc
5' end seq. ID VHF368F
5' end seq. 
>VHF368F.Seq
AAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATT
TTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGT
ACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGA
GAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTCAAAAATTTG
TCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTC
AATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGAATATTCTGA
TTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAGTTTTGGTGA
TAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAATAAAGTTAA
TGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTCATTAGATAA
ACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATTNNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID VHF368Z
3' end seq. 
>VHF368Z.Seq
NNNNNNNNNNGAAGTATATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGG
TTCACCAATGGAAGAATGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAA
GATTCTTGAACTCTTTGGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAA
TTGGTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCNCCAAGTGA
AGGTGCNCCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAAC
ATTCTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCNGACGATGTAATTGTCAAACT
TGATAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCNTCAATAGATT
AATGGTTTACAAAGCAACTGCAAATATTGATGCTTCAATCAAATTATTCGATGAATATAC
TCATGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTGGNTAAAAAGAAACCAAG
AAAGGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGA
TTTTGATGACTCAACTCAAGGTATGATCGATTCAATGATCNCCAGATTTGGTAAAGATGA
TTCTGATATGTTATAAAGCTTTTTATTAAATTTCCNAAAAATAAAATAATATAAAATAAA
ATAAAATAAAATAAAATAAAATATAA
Length of 3' end seq. 746
Connected seq. ID VHF368P
Connected seq. 
>VHF368P.Seq
AAACAATAACAATAATAATTTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATT
TTATTCAACAAATAATTTAATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGT
ACCAAAGGAGATTCCAGTTTATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGA
GAAAGAACAACTCTATGCCCATCATATTAGTGTTGCCTGTTGGTGGGGTTCAAAAATTTG
TCTTGGTCAAACATCTATTGAAAGTGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTC
AATTCAAAATTTAAAATCAACTGTTGTTCCAAATATTGTTTCTGAAGAAGAATATTCTGA
TTTATTATCATATGCTGCAACTTTTTATGGTAATATGGGTAATTACTTAAGTTTTGGTGA
TAGTAAATTTATTCCAAGAATTTCAAAAGAAAAATTACAATTAATTATTAATAAAGTTAA
TGATAATAAAGTCAATGAATATTGGGGTAAATGTAGTGAATTAATGTATTCATTAGATAA
ACAAGTAAGAGAATTGGGTATTGATGGTAATGGTATTTCAACCTATT----------GAA
GTATATAAATTTGGTGAAACTTATGACAGTGTTTTCAAATCATTGGGTTCACCAATGGAA
GAATGTAGAGCAGAATGTTGTGGTATCTATTTATCACCAGATGAAAAGATTCTTGAACTC
TTTGGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATG
GCACGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCNCCAAGTGAAGGTGCNCCAGGT
AAATGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCT
GGTATTGTCACTTTAGACAAGACTGCNGACGATGTAATTGTCAAACTTGATAAAAGTAAA
ATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCNTCAATAGATTAATGGTTTACAAA
GCAACTGCAAATATTGATGCTTCAATCAAATTATTCGATGAATATACTCATGTCAATGAA
GAATTCCTCGCCATTAGAGATATAGTTTTGGNTAAAAAGAAACCAAGAAAGGTATTTGTT
CAAGCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCA
ACTCAAGGTATGATCGATTCAATGATCNCCAGATTTGGTAAAGATGATTCTGATATGTTA
TAAAGCTTTTTATTAAATTTCCNAAAAATAAAATAATATAAAATAAAATAAAATAAAATA
AAATAAAATATAA
Length of connected seq. 1323
Full length Seq ID -
Full length Seq. -
Length of full length seq. -