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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF366
Library VH
(Link to library)
Clone ID VHF366
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12131-1|Contig-U13633-1
Original site URL
Representative seq. ID VHF366P
(Link to Original site)
Representative DNA sequence 
>VHF366 (VHF366Q) /CSM/VH/VHF3-C/VHF366Q.Seq.d/
AATAATTTATTATTATTATTAATAAGTAATAGAAATAAAAGATGGAACCAATTCCAGATA
TTTCAAAATTAAATATTAATGATTCTACTACCACCACCAACACCACCACCAACACAACAC
CAAATAAAAAACCACAACAACAAAATTCCAAACAAGCACCAAAAGTTGCATTATTAACAG
AAGAACAAATTAAAAAATGTTTACCAATTTTAAAATGTGAAGTTAAAGATTGTAATATTC
AAATGAATTTAGATCACTTTAATAATGGTTTACCAATTCATATGGTCATTAATAAGGAAA
CTAATGATTTCGTTATTGTTAAAGTTGATAATCAAGAATTAGAAGAATATCAATTAATTT
ATTCAGTACCAAAAATTCAATCATTTAAAAAGGATATTTTAATTCAACAACAGCAACCAC
AACAACCACAACAAAAATCAGAATCATCAGCAGGTGCTGATGAGGAGAAAGAGGATACAA
CTGTAACAACTGTAACAACTGTAACAACTGTAACAACAACAACACCAACAATTACTAAAT
TTAATTCATATTATATTTCAAATAAATGGAATGGTATGAAXXXXXXXXXXCCGCCATGAG
AATGATATTTGTTCGTTGGCATTACCACCAGTGGTTGCAACACCATTATCGAAATCAAAG
TTGGTTATCACTTGTGGTCTACCAGCATGCGGTAAAAGTTATTTCGCTCAAGCAATNTCT
GAACGTTCTTCTGGTGCTTGGAAACGTATCAATCAAGATGATCTTGGCACTCGTAAGAAA
TGCGAAGATNTCTTAAAACAGTACTTGAAGGCTGGTCATAATGTTATCATTGATCGTTGT
AATCAAGATATCGGTCAACGTAGAAATTGGATTAAATTAGCAGCATCTTTAGGTGTAGCC
CAAGTTCATTTGATTTGGTTCACAATTGATCAAACCATTTGTAAAGGTCGTATCGTTGTA
CGTGAAAATCATCCAACCATTCCAAAAGGTGATGAAGGTATTGCTATCATTGATAAATTC
NTCACAATGTTTGTACCNCNTTNTGAATTTGAAGGTTTCGCTTCATTAACTCAAGTTTCA
AGTGAACAAGAATCAAATGATTTAATNAAAAATATATTTCAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
*fiiiink**k*KMEPIPDISKLNINDSTTTTNTTTNTTPNKKPQQQNSKQAPKVALLTE
EQIKKCLPILKCEVKDCNIQMNLDHFNNGLPIHMVINKETNDFVIVKVDNQELEEYQLIY
SVPKIQSFKKDILIQQQQPQQPQQKSESSAGADEEKEDTTVTTVTTVTTVTTTTPTITKF
NSYYISNKWNGM---

---RHENDICSLALPPVVATPLSKSKLVITCGLPACGKSYFAQAXSERSSGAWKRINQDD
LGTRKKCEDXLKQYLKAGHNVIIDRCNQDIGQRRNWIKLAASLGVAQVHLIWFTIDQTIC
KGRIVVRENHPTIPKGDEGIAIIDKFXTMFVPXXEFEGFASLTQVSSEQESNDLXKNIFQ
Translated Amino Acid sequence (All Frames) 
Frame A:
nnlllllisnrnkrwnqfqifqn*ilmillppptppptqhqiknhnnkipnkhqklhy*q
knklknvyqf*nvklkivifk*i*itlimvyqfiwslirklmislllkliikn*knin*f
iqyqkfnhlkrif*fnnsnhnnhnknqnhqqvlmrrkriql*ql*ql*ql*qqqhqqlln
lihiifqingmv*---

---pp*e*ylfvgittsgcntiieikvgyhlwstsmr*klfrssnx*tffwcletyqsr*
swhs*emrrxlktvlegws*cyh*sl*sryrst*kld*issifrcspssfdlvhn*snhl
*rsyrct*kssnhskr**rycyh**ixhnvctxx*i*rfrfinssfk*trik*fnxkyis
t

Frame B:
iiyyyy**vieikdgtnsryfkiky**fyyhhqhhhqhntk*kttttkfqtstksciinr
rtn*kmftnfkm*s*rl*ysnefrsl**wftnsygh**gn**fryc*s**srirrisinl
fstknsii*kgyfnsttattttttkiriisrc**gergyncnncnncnncnnnntnny*i
*filyfk*mewye---

---RHENDICSLALPPVVATPLSKSKLVITCGLPACGKSYFAQAXSERSSGAWKRINQDD
LGTRKKCEDXLKQYLKAGHNVIIDRCNQDIGQRRNWIKLAASLGVAQVHLIWFTIDQTIC
KGRIVVRENHPTIPKGDEGIAIIDKFXTMFVPXXEFEGFASLTQVSSEQESNDLXKNIFQ

Frame C:
*fiiiink**k*KMEPIPDISKLNINDSTTTTNTTTNTTPNKKPQQQNSKQAPKVALLTE
EQIKKCLPILKCEVKDCNIQMNLDHFNNGLPIHMVINKETNDFVIVKVDNQELEEYQLIY
SVPKIQSFKKDILIQQQQPQQPQQKSESSAGADEEKEDTTVTTVTTVTTVTTTTPTITKF
NSYYISNKWNGM---

---amrmifvrwhyhqwlqhhyrnqswlslvvyqhavkvislkqxlnvllvlgnvsikmi
lalvrnakxs*nst*rlvimlslivvikisvnveigln*qhl*v*pkfi*fgsqlikpfv
kvvslyvkiiqpfqkvmkvllslinssqclyxxxnlkvslh*lkfqvnknqmi*xkiyfn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF366 (VHF366Q) /CSM/VH/VHF3-C/VHF366Q.Seq.d/                       1074   0.0
SLB459 (SLB459Q) /CSM/SL/SLB4-C/SLB459Q.Seq.d/                        995   0.0
VHF384 (VHF384Q) /CSM/VH/VHF3-D/VHF384Q.Seq.d/                        987   0.0
VSI128 (VSI128Q) /CSM/VS/VSI1-B/VSI128Q.Seq.d/                        977   0.0
SSG871 (SSG871Q) /CSM/SS/SSG8-C/SSG871Q.Seq.d/                        955   0.0
VHO303 (VHO303Q) /CSM/VH/VHO3-A/VHO303Q.Seq.d/                         56   1e-06
SHG251 (SHG251Q) /CSM/SH/SHG2-C/SHG251Q.Seq.d/                         56   1e-06
SFI116 (SFI116Q) /CSM/SF/SFI1-A/SFI116Q.Seq.d/                         56   1e-06
CHM653 (CHM653Q) /CSM/CH/CHM6-C/CHM653Q.Seq.d/                         56   1e-06
CHH784 (CHH784Q) /CSM/CH/CHH7-D/CHH784Q.Seq.d/                         56   1e-06
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439764) Dictyostelium discoideum cDNA clone:ddv41d17, 3' ...  1017   0.0    1
(AU033803) Dictyostelium discoideum slug cDNA, clone SLB459.      979   0.0    2
(BJ439850) Dictyostelium discoideum cDNA clone:ddv41h21, 3' ...   971   0.0    2
(AU268195) Dictyostelium discoideum vegetative cDNA clone:VS...   961   0.0    2
(C84868) Dictyostelium discoideum slug cDNA, clone SSG871.        940   0.0    2
(AU268196) Dictyostelium discoideum vegetative cDNA clone:VS...   928   0.0    2
(BJ421045) Dictyostelium discoideum cDNA clone:ddv41d17, 5' ...   618   0.0    3
(BJ421137) Dictyostelium discoideum cDNA clone:ddv41h21, 5' ...   618   0.0    3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    44   6e-06  6
(AL844509) Plasmodium falciparum chromosome 13.                    44   2e-05  9
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954206_393(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    65   3e-09
(Q9M041) RecName: Full=Transcription factor bHLH140; AltName: Fu...    65   3e-09
CU633457_71(CU633457|pid:none) Podospora anserina genomic DNA ch...    63   2e-08
BC124634_1(BC124634|pid:none) Danio rerio zgc:153084, mRNA (cDNA...    60   2e-07
BC161787_1(BC161787|pid:none) Xenopus tropicalis hypothetical pr...    58   7e-07
(Q19683) RecName: Full=Uncharacterized protein F21D5.5;  &AF2920...    58   7e-07
CP000586_364(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...    57   9e-07
BC079307_1(BC079307|pid:none) Rattus norvegicus polynucleotide k...    56   2e-06
AC018766_1(AC018766|pid:none) Homo sapiens chromosome 19, cosmid...    55   6e-06
(Q96T60) RecName: Full=Bifunctional polynucleotide phosphatase/k...    55   6e-06
protein update 2009. 7. 2
PSORT 

 psg: 0.65  gvh: 0.20  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VHF366 is cyt
5' end seq. ID VHF366F
5' end seq. 
>VHF366F.Seq
AATAATTTATTATTATTATTAATAAGTAATAGAAATAAAAGATGGAACCAATTCCAGATA
TTTCAAAATTAAATATTAATGATTCTACTACCACCACCAACACCACCACCAACACAACAC
CAAATAAAAAACCACAACAACAAAATTCCAAACAAGCACCAAAAGTTGCATTATTAACAG
AAGAACAAATTAAAAAATGTTTACCAATTTTAAAATGTGAAGTTAAAGATTGTAATATTC
AAATGAATTTAGATCACTTTAATAATGGTTTACCAATTCATATGGTCATTAATAAGGAAA
CTAATGATTTCGTTATTGTTAAAGTTGATAATCAAGAATTAGAAGAATATCAATTAATTT
ATTCAGTACCAAAAATTCAATCATTTAAAAAGGATATTTTAATTCAACAACAGCAACCAC
AACAACCACAACAAAAATCAGAATCATCAGCAGGTGCTGATGAGGAGAAAGAGGATACAA
CTGTAACAACTGTAACAACTGTAACAACTGTAACAACAACAACACCAACAATTACTAAAT
TTAATTCATATTATATTTCAAATAAATGGAATGGTATGAANNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID VHF366Z
3' end seq. 
>VHF366Z.Seq
NNNNNNNNNNCCGCCATGAGAATGATATTTGTTCGTTGGCATTACCACCAGTGGTTGCAA
CACCATTATCGAAATCAAAGTTGGTTATCACTTGTGGTCTACCAGCATGCGGTAAAAGTT
ATTTCGCTCAAGCAATNTCTGAACGTTCTTCTGGTGCTTGGAAACGTATCAATCAAGATG
ATCTTGGCACTCGTAAGAAATGCGAAGATNTCTTAAAACAGTACTTGAAGGCTGGTCATA
ATGTTATCATTGATCGTTGTAATCAAGATATCGGTCAACGTAGAAATTGGATTAAATTAG
CAGCATCTTTAGGTGTAGCCCAAGTTCATTTGATTTGGTTCACAATTGATCAAACCATTT
GTAAAGGTCGTATCGTTGTACGTGAAAATCATCCAACCATTCCAAAAGGTGATGAAGGTA
TTGCTATCATTGATAAATTCNTCACAATGTTTGTACCNCNTTNTGAATTTGAAGGTTTCG
CTTCATTAACTCAAGTTTCAAGTGAACAAGAATCAAATGATTTAATNAAAAATATATTTC
AACT
Length of 3' end seq. 544
Connected seq. ID VHF366P
Connected seq. 
>VHF366P.Seq
AATAATTTATTATTATTATTAATAAGTAATAGAAATAAAAGATGGAACCAATTCCAGATA
TTTCAAAATTAAATATTAATGATTCTACTACCACCACCAACACCACCACCAACACAACAC
CAAATAAAAAACCACAACAACAAAATTCCAAACAAGCACCAAAAGTTGCATTATTAACAG
AAGAACAAATTAAAAAATGTTTACCAATTTTAAAATGTGAAGTTAAAGATTGTAATATTC
AAATGAATTTAGATCACTTTAATAATGGTTTACCAATTCATATGGTCATTAATAAGGAAA
CTAATGATTTCGTTATTGTTAAAGTTGATAATCAAGAATTAGAAGAATATCAATTAATTT
ATTCAGTACCAAAAATTCAATCATTTAAAAAGGATATTTTAATTCAACAACAGCAACCAC
AACAACCACAACAAAAATCAGAATCATCAGCAGGTGCTGATGAGGAGAAAGAGGATACAA
CTGTAACAACTGTAACAACTGTAACAACTGTAACAACAACAACACCAACAATTACTAAAT
TTAATTCATATTATATTTCAAATAAATGGAATGGTATGAA----------CCGCCATGAG
AATGATATTTGTTCGTTGGCATTACCACCAGTGGTTGCAACACCATTATCGAAATCAAAG
TTGGTTATCACTTGTGGTCTACCAGCATGCGGTAAAAGTTATTTCGCTCAAGCAATNTCT
GAACGTTCTTCTGGTGCTTGGAAACGTATCAATCAAGATGATCTTGGCACTCGTAAGAAA
TGCGAAGATNTCTTAAAACAGTACTTGAAGGCTGGTCATAATGTTATCATTGATCGTTGT
AATCAAGATATCGGTCAACGTAGAAATTGGATTAAATTAGCAGCATCTTTAGGTGTAGCC
CAAGTTCATTTGATTTGGTTCACAATTGATCAAACCATTTGTAAAGGTCGTATCGTTGTA
CGTGAAAATCATCCAACCATTCCAAAAGGTGATGAAGGTATTGCTATCATTGATAAATTC
NTCACAATGTTTGTACCNCNTTNTGAATTTGAAGGTTTCGCTTCATTAACTCAAGTTTCA
AGTGAACAAGAATCAAATGATTTAATNAAAAATATATTTCAACT
Length of connected seq. 1114
Full length Seq ID -
Full length Seq. -
Length of full length seq. -