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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF348
Library VH
(Link to library)
Clone ID VHF348
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13926-1
Original site URL
Representative seq. ID VHF348P
(Link to Original site)
Representative DNA sequence 
>VHF348 (VHF348Q) /CSM/VH/VHF3-B/VHF348Q.Seq.d/
TTTTTAATNATACAAATACAATATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTT
CGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGC
CGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGA
TATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGT
TAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCA
AGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGAT
TCCATCTGATGCTCCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAA
TGCTGAAATCGCCTGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAATAAAA
TAAAATAAAAACACACCATCGATAAATTATTTATAAATTAANNAAAANAXXXXXXXXXXT
TTTTAATCATACAAATACAATATATCAAATAAAATGAGATTATTATTAGCCNTCTTTTTC
GTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCC
GATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGAT
ATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTT
AAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTNTCAA
GACCCATTAGCATGCCCAATTGCTGNTGGTGATTACCAAAAGAATATGACCGAAATGATT
CCATCTGATGCTCCATCAGGTAAATACNCTGGTAACGTTGTTATCACCGATCAAAACAAT
GCTGAAATCGCNTGTATTGATGTTGATATTAACTTGTAAACG
sequence update 2002.10.25
Translated Amino Acid sequence 
f*xykynisnkmrlllalffvlalvspsftqvwsncgtaadkfqitnvvldpptpvkgqd
itisasgildetvtggnvavkvkygfitlinenvsicssqdplacpiaagdyqknmtemi
psdapsgkytgnvvitdqnnaeiacidvdinl*tnkik*nkikthhr*IIYKLXKX---

---FNHTNTIYQIK*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlk
dkisqsvhqvfsmkpslvemlplksnmvslhlsmkmflfavxkth*haqllxvitkri*p
k*fhlmlhqvntlvtllspiktmlksxvlmliltck
Translated Amino Acid sequence (All Frames) 
Frame A:
flxiqiqyik*neiiisplfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*rtr
yhnqcirysr*nrhwwkccr*sqiwfhytyq*kcfylqfsrpismpnccw*lpkeydrnd
si*csir*ihw*rcyhrskqc*nrly*c*y*lvne*nkik*nkntpsinyl*ixxx---

---fliiqiqyik*neiiisxlfrscfsfpifhpslvklwyccr*ipnyqcsirptnts*
rtryhnqcirysr*nrhwwkccr*sqiwfhytyq*kcfylqxsrpismpncxw*lpkeyd
rndsi*csir*ixw*rcyhrskqc*nrxy*c*y*lvn

Frame B:
f*xykynisnkmrlllalffvlalvspsftqvwsncgtaadkfqitnvvldpptpvkgqd
itisasgildetvtggnvavkvkygfitlinenvsicssqdplacpiaagdyqknmtemi
psdapsgkytgnvvitdqnnaeiacidvdinl*tnkik*nkikthhr*IIYKLXKX---

---f*sykynisnkmrlllaxffvlalvspsftqvwsncgtaadkfqitnvvldpptpvk
gqditisasgildetvtggnvavkvkygfitlinenvsicsxqdplacpiaxgdyqknmt
emipsdapsgkyxgnvvitdqnnaeiacidvdinl*t

Frame C:
fnxtntiyqik*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlkdki
sqsvhqvfsmkpslvemlplksnmvslhlsmkmflfavlkth*haqlllvitkri*pk*f
hlmlhqvntlvtllspiktmlkspvlmliltckrik*nkik*khtidklfin*xk---

---FNHTNTIYQIK*dyy*psfsfll*fphlspkfgqivvllpinsklpm*y*thqhqlk
dkisqsvhqvfsmkpslvemlplksnmvslhlsmkmflfavxkth*haqllxvitkri*p
k*fhlmlhqvntlvtllspiktmlksxvlmliltck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF348 (VHF348Q) /CSM/VH/VHF3-B/VHF348Q.Seq.d/                        912   0.0
VSI417 (VSI417Q) /CSM/VS/VSI4-A/VSI417Q.Seq.d/                        896   0.0
VSI354 (VSI354Q) /CSM/VS/VSI3-C/VSI354Q.Seq.d/                        894   0.0
VSJ851 (VSJ851Q) /CSM/VS/VSJ8-C/VSJ851Q.Seq.d/                        884   0.0
VSA770 (VSA770Q) /CSM/VS/VSA7-C/VSA770Q.Seq.d/                        884   0.0
VSJ841 (VSJ841Q) /CSM/VS/VSJ8-B/VSJ841Q.Seq.d/                        882   0.0
VSE688 (VSE688Q) /CSM/VS/VSE6-D/VSE688Q.Seq.d/                        878   0.0
VSJ452 (VSJ452Q) /CSM/VS/VSJ4-C/VSJ452Q.Seq.d/                        874   0.0
VSG174 (VSG174Q) /CSM/VS/VSG1-D/VSG174Q.Seq.d/                        866   0.0
VSG156 (VSG156Q) /CSM/VS/VSG1-C/VSG156Q.Seq.d/                        866   0.0
own update 2002.12.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421029) Dictyostelium discoideum cDNA clone:ddv41p11, 5' ...   912   0.0    2
(AU268662) Dictyostelium discoideum vegetative cDNA clone:VS...   896   0.0    2
(AU261725) Dictyostelium discoideum vegetative cDNA clone:VS...   884   0.0    2
(AU269941) Dictyostelium discoideum vegetative cDNA clone:VS...   874   0.0    2
(AU263297) Dictyostelium discoideum vegetative cDNA clone:VS...   878   0.0    2
(AU268562) Dictyostelium discoideum vegetative cDNA clone:VS...   894   0.0    2
(AU266082) Dictyostelium discoideum vegetative cDNA clone:VS...   866   0.0    2
(AU268663) Dictyostelium discoideum vegetative cDNA clone:VS...   896   0.0    1
(AU270554) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    2
(AU270037) Dictyostelium discoideum vegetative cDNA clone:VS...   856   0.0    2
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SZ8) RecName: Full=Putative phosphatidylglycerol/phosphatidy...   133   8e-30
(Q54KP7) RecName: Full=Putative phosphatidylglycerol/phosphatidy...    85   4e-15
(Q4P580) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    84   6e-15
CU928167_354(CU928167|pid:none) Kluyveromyces thermotolerans str...    75   4e-12
(Q7RZ85) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    72   2e-11
(Q4X136) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   3e-10
(Q6CNE0) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    69   3e-10
AK227594_1(AK227594|pid:none) Arabidopsis thaliana mRNA for hypo...    68   4e-10
CP000502_275(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...    67   7e-10
(Q12408) RecName: Full=Phosphatidylglycerol/phosphatidylinositol...    66   2e-09
protein update 2009. 7. 2
PSORT -
5' end seq. ID VHF348F
5' end seq. 
>VHF348F.Seq
TTTTTAATNATACAAATACAATATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTT
CGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGC
CGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGA
TATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGT
TAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCA
AGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGAT
TCCATCTGATGCTCCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAA
TGCTGAAATCGCCTGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAATAAAA
TAAAATAAAAACACACCATCGATAAATTATTTATAAATTAANNAAAANANNNNNNNNNN
Length of 5' end seq. 539
3' end seq. ID VHF348Z
3' end seq. 
>VHF348Z.Seq
NNNNNNNNNNTTTTTAATCATACAAATACAATATATCAAATAAAATGAGATTATTATTAG
CCNTCTTTTTCGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTG
GTACTGCTGCCGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTA
AAGGACAAGATATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAA
ATGTTGCCGTTAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTT
GCAGTTNTCAAGACCCATTAGCATGCCCAATTGCTGNTGGTGATTACCAAAAGAATATGA
CCGAAATGATTCCATCTGATGCTCCATCAGGTAAATACNCTGGTAACGTTGTTATCACCG
ATCAAAACAATGCTGAAATCGCNTGTATTGATGTTGATATTAACTTGTAAACG
Length of 3' end seq. 473
Connected seq. ID VHF348P
Connected seq. 
>VHF348P.Seq
TTTTTAATNATACAAATACAATATATCAAATAAAATGAGATTATTATTAGCCCTCTTTTT
CGTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGC
CGATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGA
TATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGT
TAAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTCTCA
AGACCCATTAGCATGCCCAATTGCTGCTGGTGATTACCAAAAGAATATGACCGAAATGAT
TCCATCTGATGCTCCATCAGGTAAATACACTGGTAACGTTGTTATCACCGATCAAAACAA
TGCTGAAATCGCCTGTATTGATGTTGATATTAACTTGTAAACGAATAAAATAAAATAAAA
TAAAATAAAAACACACCATCGATAAATTATTTATAAATTAANNAAAANA----------T
TTTTAATCATACAAATACAATATATCAAATAAAATGAGATTATTATTAGCCNTCTTTTTC
GTTCTTGCTTTAGTTTCCCCATCTTTCACCCAAGTTTGGTCAAATTGTGGTACTGCTGCC
GATAAATTCCAAATTACCAATGTAGTATTAGACCCACCAACACCAGTTAAAGGACAAGAT
ATCACAATCAGTGCATCAGGTATTCTCGATGAAACCGTCACTGGTGGAAATGTTGCCGTT
AAAGTCAAATATGGTTTCATTACACTTATCAATGAAAATGTTTCTATTTGCAGTTNTCAA
GACCCATTAGCATGCCCAATTGCTGNTGGTGATTACCAAAAGAATATGACCGAAATGATT
CCATCTGATGCTCCATCAGGTAAATACNCTGGTAACGTTGTTATCACCGATCAAAACAAT
GCTGAAATCGCNTGTATTGATGTTGATATTAACTTGTAAACG
Length of connected seq. 992
Full length Seq ID -
Full length Seq. -
Length of full length seq. -