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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF338
Library VH
(Link to library)
Clone ID VHF338
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14303-1
Original site URL
Representative seq. ID VHF338P
(Link to Original site)
Representative DNA sequence 
>VHF338 (VHF338Q) /CSM/VH/VHF3-B/VHF338Q.Seq.d/
AAAAACAGAATTTTCTATAATATTATTGTGTATTCATATTTAAAGAAAAAAAATAAAAAA
TAGAATAAAAATAAAAACAAAGAAGAAAAAAAAATAAAAATAATTTTTAAATTGAAAATT
TTAACTTTTTTTTTTTNTTTTTNATTTAAATTAATTTTNAATTTTNGNAATTTTNCNCNC
AAAANTAAAAAAAATCGAXXXXXXXXXXGCCGGTGTTTATACATGTGCTNTCTTGGGTGT
AATGTCANTGTTTGCCATTGGTAATATGTTGTTGAAATATAAACGTTCNTCACTTCGTAG
AGATATTAAGTCACCATGGATTGGCGTATTGATTGCATTGTTTTCCGTTANTCTTGGTTT
AATTTCAAATATTATCAAGGATGATTCAATCGTTTACTACTTTGGTATTTACTTTGGTGT
TACCATTTTCATTATCATGTTAATGTTTATTCGTGCACGTATTCTCAAGTTATTCCTTTT
CTTCACTCAAATCATTATAAGTGGTGCTGGTCGTGATCGTGTTGCTCGTTGGATTGGTGA
TGTCATTAAAAAGATTAACTCTCAACCAGTTGTCTTCTTTGCTTCAAAGGATGATCCAGC
NTATTTGAATAAAGCCATCCTTTACATTCGTGATAATGAACAAACCAATTGGGTTAGAGT
CGTACATTGTTGTAATGAAGAAGAATCAACCGATTCTTTATCTTCAACTATGGAANTCTT
AGATAAATGTTATCCAAAGATTAGATTAGATATCATTCGTGTCAACGCTGAATTCAATGC
TTCCNCTGTTCAAAAGATCTCTCAAGAATTAAAGATTGACTTAAACTTTTGTTTCGTATC
TTGTATTAAAGACCGTGAGGATGGTGATCCTTCAAGATTCCAG
sequence update 2002.10.25
Translated Amino Acid sequence 
knrifyniivysylkkknkk*NKNKNKEEKKIKIIFKLKILTFFFXFXFKLIXNFXNFXX
KXKKNR---

---AGVYTCAXLGVMSXFAIGNMLLKYKRSSLRRDIKSPWIGVLIALFSVXLGLISNIIK
DDSIVYYFGIYFGVTIFIIMLMFIRARILKLFLFFTQIIISGAGRDRVARWIGDVIKKIN
SQPVVFFASKDDPAYLNKAILYIRDNEQTNWVRVVHCCNEEESTDSLSSTMEXLDKCYPK
IRLDIIRVNAEFNASXVQKISQELKIDLNFCFVSCIKDREDGDPSRFQ
Translated Amino Acid sequence (All Frames) 
Frame A:
knrifyniivysylkkknkk*NKNKNKEEKKIKIIFKLKILTFFFXFXFKLIXNFXNFXX
KXKKNR---

---AGVYTCAXLGVMSXFAIGNMLLKYKRSSLRRDIKSPWIGVLIALFSVXLGLISNIIK
DDSIVYYFGIYFGVTIFIIMLMFIRARILKLFLFFTQIIISGAGRDRVARWIGDVIKKIN
SQPVVFFASKDDPAYLNKAILYIRDNEQTNWVRVVHCCNEEESTDSLSSTMEXLDKCYPK
IRLDIIRVNAEFNASXVQKISQELKIDLNFCFVSCIKDREDGDPSRFQ

Frame B:
ktefsiillcihi*rkkiknrikiktkkkkk*k*fln*kf*lfffxfxln*fxixxixxx
kxkki---

---pvfihvlswv*cxclplvicc*ninvxhfveilshhglay*lhcfplxlv*fqilsr
miqsfttlvftlvlpfslsc*clfvhvfssysfsslksl*vvlvvivllvglvmslkrlt
lnqlssllqrmiqxi*ikpsftfvimnkpiglesyivvmkknqpilylqlwxs*inviqr
ld*isfvstlnsmlplfkrslkn*rlt*tfvsylvlktvrmvilqds

Frame C:
kqnfl*yycvfifkekk*kie*k*kqrrkknknnf*ienfnfffxfxi*infxfxxfxxq
x*kks---

---rclymcxlgcnvxvchw*yvvei*tfxts*ry*vtmdwridcivfrxswfnfkyyqg
*fnrlllwyllwcyhfhyhvnvysctysqvipflhsnhykwcws*sccsldw*ch*kd*l
stscllcfkg*ssxfe*shplhs***tnqlg*srtll**rrinrffifnygxlr*mlskd
*iryhscqr*iqcfxcskdlsrikd*lkllfrily*rp*gw*sfkip
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF338 (VHF338Q) /CSM/VH/VHF3-B/VHF338Q.Seq.d/                       1296   0.0
VHK267 (VHK267Q) /CSM/VH/VHK2-C/VHK267Q.Seq.d/                       1259   0.0
CHG858 (CHG858Q) /CSM/CH/CHG8-C/CHG858Q.Seq.d/                       1249   0.0
VHI612 (VHI612Q) /CSM/VH/VHI6-A/VHI612Q.Seq.d/                       1243   0.0
VFI245 (VFI245Q) /CSM/VF/VFI2-B/VFI245Q.Seq.d/                       1243   0.0
VHI627 (VHI627Q) /CSM/VH/VHI6-B/VHI627Q.Seq.d/                       1235   0.0
CHR455 (CHR455Q) /CSM/CH/CHR4-C/CHR455Q.Seq.d/                       1221   0.0
SHA452 (SHA452Q) /CSM/SH/SHA4-C/SHA452Q.Seq.d/                       1215   0.0
CHM162 (CHM162Q) /CSM/CH/CHM1-C/CHM162Q.Seq.d/                       1205   0.0
CHI770 (CHI770Q) /CSM/CH/CHI7-C/CHI770Q.Seq.d/                       1205   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439729) Dictyostelium discoideum cDNA clone:ddv41l09, 3' ...  1294   0.0    1
(BJ442987) Dictyostelium discoideum cDNA clone:ddv51e18, 3' ...  1257   0.0    1
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...  1247   0.0    1
(BJ441854) Dictyostelium discoideum cDNA clone:ddv48g04, 3' ...  1241   0.0    1
(BJ432022) Dictyostelium discoideum cDNA clone:ddv17i12, 3' ...  1225   0.0    2
(BJ379647) Dictyostelium discoideum cDNA clone:ddc35d16, 3' ...  1225   0.0    2
(BJ385952) Dictyostelium discoideum cDNA clone:ddc56n14, 3' ...  1219   0.0    1
(BJ441928) Dictyostelium discoideum cDNA clone:ddv48e08, 3' ...  1217   0.0    1
(BJ403269) Dictyostelium discoideum cDNA clone:dds24h14, 3' ...  1211   0.0    1
(BJ444831) Dictyostelium discoideum cDNA clone:ddv57g18, 3' ...  1201   0.0    1
dna update 2008.10.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116925_7(AC116925|pid:none) Dictyostelium discoideum chromosom...   427   e-118
CT025834_28(CT025834|pid:none) uncultured sulfate-reducing bacte...   125   2e-27
CP000685_2780(CP000685|pid:none) Flavobacterium johnsoniae UW101...   109   1e-22
CR522870_2116(CR522870|pid:none) Desulfotalea psychrophila LSv54...   106   1e-21
(P53099) RecName: Full=Vitamin B6 transporter TPN1; AltName: Ful...    37   0.68
AE014186_297(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.5
CR380958_263(CR380958|pid:none) Candida glabrata strain CBS138 c...    35   4.4
EU016195_9(EU016195|pid:none) Orchesella villosa mitochondrion, ...    34   5.7
CP001581_1292(CP001581|pid:none) Clostridium botulinum A2 str. K...    34   7.5
AE015927_2246(AE015927|pid:none) Clostridium tetani E88, complet...    33   9.8
protein update 2009. 7. 2
PSORT 

 psg: 0.64  gvh: 0.49  alm: 0.21  top: 0.47  tms: 0.33  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for VHF338 is end
5' end seq. ID VHF338F
5' end seq. 
>VHF338F.Seq
AAAAACAGAATTTTCTATAATATTATTGTGTATTCATATTTAAAGAAAAAAAATAAAAAA
TAGAATAAAAATAAAAACAAAGAAGAAAAAAAAATAAAAATAATTTTTAAATTGAAAATT
TTAACTTTTTTTTTTTNTTTTTNATTTAAATTAATTTTNAATTTTNGNAATTTTNCNCNC
AAAANTAAAAAAAATCGANNNNNNNNNN
Length of 5' end seq. 208
3' end seq. ID VHF338Z
3' end seq. 
>VHF338Z.Seq
NNNNNNNNNNGCCGGTGTTTATACATGTGCTNTCTTGGGTGTAATGTCANTGTTTGCCAT
TGGTAATATGTTGTTGAAATATAAACGTTCNTCACTTCGTAGAGATATTAAGTCACCATG
GATTGGCGTATTGATTGCATTGTTTTCCGTTANTCTTGGTTTAATTTCAAATATTATCAA
GGATGATTCAATCGTTTACTACTTTGGTATTTACTTTGGTGTTACCATTTTCATTATCAT
GTTAATGTTTATTCGTGCACGTATTCTCAAGTTATTCCTTTTCTTCACTCAAATCATTAT
AAGTGGTGCTGGTCGTGATCGTGTTGCTCGTTGGATTGGTGATGTCATTAAAAAGATTAA
CTCTCAACCAGTTGTCTTCTTTGCTTCAAAGGATGATCCAGCNTATTTGAATAAAGCCAT
CCTTTACATTCGTGATAATGAACAAACCAATTGGGTTAGAGTCGTACATTGTTGTAATGA
AGAAGAATCAACCGATTCTTTATCTTCAACTATGGAANTCTTAGATAAATGTTATCCAAA
GATTAGATTAGATATCATTCGTGTCAACGCTGAATTCAATGCTTCCNCTGTTCAAAAGAT
CTCTCAAGAATTAAAGATTGACTTAAACTTTTGTTTCGTATCTTGTATTAAAGACCGTGA
GGATGGTGATCCTTCAAGATTCCAG
Length of 3' end seq. 685
Connected seq. ID VHF338P
Connected seq. 
>VHF338P.Seq
AAAAACAGAATTTTCTATAATATTATTGTGTATTCATATTTAAAGAAAAAAAATAAAAAA
TAGAATAAAAATAAAAACAAAGAAGAAAAAAAAATAAAAATAATTTTTAAATTGAAAATT
TTAACTTTTTTTTTTTNTTTTTNATTTAAATTAATTTTNAATTTTNGNAATTTTNCNCNC
AAAANTAAAAAAAATCGA----------GCCGGTGTTTATACATGTGCTNTCTTGGGTGT
AATGTCANTGTTTGCCATTGGTAATATGTTGTTGAAATATAAACGTTCNTCACTTCGTAG
AGATATTAAGTCACCATGGATTGGCGTATTGATTGCATTGTTTTCCGTTANTCTTGGTTT
AATTTCAAATATTATCAAGGATGATTCAATCGTTTACTACTTTGGTATTTACTTTGGTGT
TACCATTTTCATTATCATGTTAATGTTTATTCGTGCACGTATTCTCAAGTTATTCCTTTT
CTTCACTCAAATCATTATAAGTGGTGCTGGTCGTGATCGTGTTGCTCGTTGGATTGGTGA
TGTCATTAAAAAGATTAACTCTCAACCAGTTGTCTTCTTTGCTTCAAAGGATGATCCAGC
NTATTTGAATAAAGCCATCCTTTACATTCGTGATAATGAACAAACCAATTGGGTTAGAGT
CGTACATTGTTGTAATGAAGAAGAATCAACCGATTCTTTATCTTCAACTATGGAANTCTT
AGATAAATGTTATCCAAAGATTAGATTAGATATCATTCGTGTCAACGCTGAATTCAATGC
TTCCNCTGTTCAAAAGATCTCTCAAGAATTAAAGATTGACTTAAACTTTTGTTTCGTATC
TTGTATTAAAGACCGTGAGGATGGTGATCCTTCAAGATTCCAG
Length of connected seq. 873
Full length Seq ID -
Full length Seq. -
Length of full length seq. -