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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF315
Library VH
(Link to library)
Clone ID VHF315
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12450-1
Original site URL
Representative seq. ID VHF315P
(Link to Original site)
Representative DNA sequence 
>VHF315 (VHF315Q) /CSM/VH/VHF3-A/VHF315Q.Seq.d/
ATTAAAAAACTTCTTACTTGGACACCCCTTTTATATATATAAATAAAAACTTCTAAATAT
AAATCCCATCTATAAATTAAAGTGTGTTTTTTTATTTTTTTTTTTATATTTTCTAATTTT
TATAATTTAAATAATAATAATAATTAAAAATAATAATAATTAAAAATAANCAAAANCAAA
TAAATAAATAATANTTAAAAAAAAAAXXXXXXXXXXANCTTTCGAAGGTGATAATATACT
ATTATATCANCAAGTTGCCAAATTCATGTTATCCGAATNTAGAAAGAATCCACCAACAGA
TTATCAACAACTTTCAAATGAACAAAAACAAAGANCTGATAGAAATTACATTAGATCTTT
CGATTTCTTATTGGAAGCTTTAAATTCAAGATTAAATCAAACCATTCAATATGTAACTGA
GAAATTAAGTGATTCCGTNTCTGAAGGTTCTGCAATTATGGACGCTTGGAATGATAATGG
TACNTATATCGTTCGTTTAGGTGTTGCTTATACTGAAAAAACTATCCTCGATAAATTCAT
TGCCGCTGTTAACAATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
lknfllghpfyiyk*kllninpiyklkcvflffflyflifii*iiiiiknnnn*k*xkxn
k*IIXKKK---

---XFEGDNILLYXQVAKFMLSEXRKNPPTDYQQLSNEQKQRXDRNYIRSFDFLLEALNS
RLNQTIQYVTEKLSDSVSEGSAIMDAWNDNGTYIVRLGVAYTEKTILDKFIAAVNNY
Translated Amino Acid sequence (All Frames) 
Frame A:
ikklltwtpllyi*iktskykshl*ikvcffifffifsnfynlnnnnn*k***lkixkxk
*innx*kk---

---xfrr**ytiisxscqihvirx*kestnrlsttfk*tktkx**klh*ifrfligsfkf
kiksnhsicn*eik*frx*rfcnygrle**wyxyrsfrccly*knypr*ihcrc*ql

Frame B:
lknfllghpfyiyk*kllninpiyklkcvflffflyflifii*iiiiiknnnn*k*xkxn
k*IIXKKK---

---XFEGDNILLYXQVAKFMLSEXRKNPPTDYQQLSNEQKQRXDRNYIRSFDFLLEALNS
RLNQTIQYVTEKLSDSVSEGSAIMDAWNDNGTYIVRLGVAYTEKTILDKFIAAVNNY

Frame C:
*ktsyldtpfiyinknf*i*ipsin*svffyfffyif*fl*fk****lkiiiiknxqxqi
nk*xlkkk---

---lskviiyyyixklpnscypnxerihqqiinnfqmnknkxlieitldlsisywkl*iq
d*ikpfnm*lrn*vipxlkvlqlwtlgmimvxisfv*vllilkklssinslpllti
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF315 (VHF315Q) /CSM/VH/VHF3-A/VHF315Q.Seq.d/                        646   0.0
VFD158 (VFD158Q) /CSM/VF/VFD1-C/VFD158Q.Seq.d/                        638   0.0
SFH389 (SFH389Q) /CSM/SF/SFH3-D/SFH389Q.Seq.d/                        638   0.0
VHN395 (VHN395Q) /CSM/VH/VHN3-D/VHN395Q.Seq.d/                        601   e-171
VFH322 (VFH322Q) /CSM/VF/VFH3-A/VFH322Q.Seq.d/                        525   e-148
FC-IC0942 (FC-IC0942Q) /CSM/FC-IC/FC-IC0942Q.Seq.d/                   490   e-137
SLK411 (SLK411Q) /CSM/SL/SLK4-A/SLK411Q.Seq.d/                        274   1e-72
VHN523 (VHN523Q) /CSM/VH/VHN5-A/VHN523Q.Seq.d/                         38   0.14
VHK466 (VHK466Q) /CSM/VH/VHK4-C/VHK466Q.Seq.d/                         38   0.14
SSL883 (SSL883Q) /CSM/SS/SSL8-D/SSL883Q.Seq.d/                         38   0.14
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   638   0.0    2
(BJ439657) Dictyostelium discoideum cDNA clone:ddv41n03, 3' ...   646   0.0    1
(BJ430510) Dictyostelium discoideum cDNA clone:ddv7c15, 3' e...   638   e-179  1
(BJ400999) Dictyostelium discoideum cDNA clone:dds15b23, 3' ...   638   e-179  1
(BJ444940) Dictyostelium discoideum cDNA clone:ddv57n23, 3' ...   601   e-167  1
(BJ431698) Dictyostelium discoideum cDNA clone:ddv15l05, 3' ...   525   e-145  1
(AU271989) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   484   e-132  1
(AU271988) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   484   e-132  1
(AU054009) Dictyostelium discoideum slug cDNA, clone SLK411.      274   3e-69  1
(BJ426041) Dictyostelium discoideum cDNA clone:ddv57n23, 5' ...    62   2e-05  1
dna update 2008.10.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_72(AC117081|pid:none) Dictyostelium discoideum chromoso...   217   2e-55
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...    40   0.032
AK317051_1(AK317051|pid:none) Arabidopsis thaliana AT5G65110 mRN...    40   0.032
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...    40   0.032
AF051203_1(AF051203|pid:none) Picea mariana acyl-CoA oxidase hom...    40   0.042
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...    39   0.072
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...    38   0.21
CR848332_1(CR848332|pid:none) Xenopus tropicalis finished cDNA, ...    37   0.36
BC125765_1(BC125765|pid:none) Xenopus tropicalis hypothetical pr...    37   0.36
CP000825_1019(CP000825|pid:none) Prochlorococcus marinus str. MI...    36   0.79
protein update 2009. 7. 2
PSORT 

 psg: 0.84  gvh: 0.35  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHF315 is cyt
5' end seq. ID VHF315F
5' end seq. 
>VHF315F.Seq
ATTAAAAAACTTCTTACTTGGACACCCCTTTTATATATATAAATAAAAACTTCTAAATAT
AAATCCCATCTATAAATTAAAGTGTGTTTTTTTATTTTTTTTTTTATATTTTCTAATTTT
TATAATTTAAATAATAATAATAATTAAAAATAATAATAATTAAAAATAANCAAAANCAAA
TAAATAAATAATANTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 216
3' end seq. ID VHF315Z
3' end seq. 
>VHF315Z.Seq
NNNNNNNNNNANCTTTCGAAGGTGATAATATACTATTATATCANCAAGTTGCCAAATTCA
TGTTATCCGAATNTAGAAAGAATCCACCAACAGATTATCAACAACTTTCAAATGAACAAA
AACAAAGANCTGATAGAAATTACATTAGATCTTTCGATTTCTTATTGGAAGCTTTAAATT
CAAGATTAAATCAAACCATTCAATATGTAACTGAGAAATTAAGTGATTCCGTNTCTGAAG
GTTCTGCAATTATGGACGCTTGGAATGATAATGGTACNTATATCGTTCGTTTAGGTGTTG
CTTATACTGAAAAAACTATCCTCGATAAATTCATTGCCGCTGTTAACAATTAT
Length of 3' end seq. 353
Connected seq. ID VHF315P
Connected seq. 
>VHF315P.Seq
ATTAAAAAACTTCTTACTTGGACACCCCTTTTATATATATAAATAAAAACTTCTAAATAT
AAATCCCATCTATAAATTAAAGTGTGTTTTTTTATTTTTTTTTTTATATTTTCTAATTTT
TATAATTTAAATAATAATAATAATTAAAAATAATAATAATTAAAAATAANCAAAANCAAA
TAAATAAATAATANTTAAAAAAAAAA----------ANCTTTCGAAGGTGATAATATACT
ATTATATCANCAAGTTGCCAAATTCATGTTATCCGAATNTAGAAAGAATCCACCAACAGA
TTATCAACAACTTTCAAATGAACAAAAACAAAGANCTGATAGAAATTACATTAGATCTTT
CGATTTCTTATTGGAAGCTTTAAATTCAAGATTAAATCAAACCATTCAATATGTAACTGA
GAAATTAAGTGATTCCGTNTCTGAAGGTTCTGCAATTATGGACGCTTGGAATGATAATGG
TACNTATATCGTTCGTTTAGGTGTTGCTTATACTGAAAAAACTATCCTCGATAAATTCAT
TGCCGCTGTTAACAATTAT
Length of connected seq. 549
Full length Seq ID -
Full length Seq. -
Length of full length seq. -