VHF307
Library VH
(Link to library)
Clone ID VHF307
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16305-1
Original site URL
Representative seq. ID VHF307P
(Link to Original site)
Representative DNA sequence
>VHF307 (VHF307Q) /CSM/VH/VHF3-A/VHF307Q.Seq.d/
ATTGATAAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAA
AACCAGTTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTG
AAAAGATTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAA
AGATGGGTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAA
ATATGGCAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATA
TTGATGCAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATG
GATTTTTATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCA
TTGGACCAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTG
CCAAAGAGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATC
ATGTTATAAAGATTGCCAACGAGATTGGTTATCXXXXXXXXXXTNTTCCATTTCACCAGA
TATTCTTTACATTGCCAAGGTTGAAAATGTTCGTCACTCCATTCATTTCTATCCACTCGA
TAATTNTGAAACTGACGCCGCTGCCAATGGTGCCAATGGTGATGATTCCTCAAGATTCAT
GGTTCAATTCATCGATCAAGAGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAAATTT
AGTCGATGCAACTCCACAATTTATCAAATTAAACATTGGTGGTATCTCTCATCGTTTCCA
AATTCACGATAAAACTTCCACATCCTACACCCTTCAATTCCATGGTTCAAAGATTCCAGT
CACCGTTTTATCTCCAGAAGAAGATTTANTCTGCCAATACATGCCAGTTAAAAAAACTGT
TGANTCTTCAAANTCTTTAATCTCACCAATGCCTGGTACTATCCTNTCTTTGGCCGTTAA
TGTAGGTGATAAAGTTGTCNTTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAATGCA
AAATGTTCTCAGAGCTCCAAAAGATTGTGAAATTAAATCAATCAATGTTAAACCTGGTCA
AGTCGTTTCTGTTGATGAAGTTTTAATNATTTTAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence
**INTKKMNRLFKVQSVISKPVGWSSIRSFHSSSANYMFEKILIANRGEIACRVMETCKK
MGIKTVAIHSDVDKNAKHVNMADEAICVGPAPTSESYLNIDAIVEAIKMTGAQAVHPGYG
FLSENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIGEVDGMDH
VIKIANEIGY---

---XSISPDILYIAKVENVRHSIHFYPLDNXETDAAANGANGDDSSRFMVQFIDQEKDGQ
VIKEFELNLVDATPQFIKLNIGGISHRFQIHDKTSTSYTLQFHGSKIPVTVLSPEEDLXC
QYMPVKKTVXSSXSLISPMPGTILSLAVNVGDKVVXGQELCIVEAMKMQNVLRAPKDCEI
KSINVKPGQVVSVDEVLXILN


Translated Amino Acid sequence (All Frames)
Frame A:
idk*iqkk*tdylkfnl*fqnqldgqalevfthlvqticlkrf*lqievklhvelwkhvk
rwvlkq*qfivmlirmlnm*iwqmkqfvldqhqhqnhi*ilmql*rqlr*qvhkqyiqvm
dfyqriqdl*kswrilv*hsldqdhmlcmh*eirsnqnvlpkrqvlvlyqvtleksmvwi
ml*rlptrlvi---

---XSISPDILYIAKVENVRHSIHFYPLDNXETDAAANGANGDDSSRFMVQFIDQEKDGQ
VIKEFELNLVDATPQFIKLNIGGISHRFQIHDKTSTSYTLQFHGSKIPVTVLSPEEDLXC
QYMPVKKTVXSSXSLISPMPGTILSLAVNVGDKVVXGQELCIVEAMKMQNVLRAPKDCEI
KSINVKPGQVVSVDEVLXILN

Frame B:
linkykkneqii*ssicnfktswmvkh*kfsli*cklyv*kdfnck*r*ncm*sygnm*k
dgy*nssns**c**ec*tckygr*snlcwtstniriifey*cncrgn*ddrctsstsrlw
ifirefkickrvgeywcnihwtriicyacirr*driktycqrgrc*cctrlhwrsrwygs
cykdcqrdwl---

---xpfhqifftlprlkmfvtpfisihsiixkltplpmvpmvmipqdswfnssikrkmvk
slrnln*i*smqlhnlsn*tlvvslivskftiklphptpfnsmvqrfqspfylqkkixsa
ntcqlkkllxlqxl*shqclvlsxlwplm*viklslvknfvslkq*kckmfselqkivkl
nqsmlnlvksfllmkf*xf*i

Frame C:
**INTKKMNRLFKVQSVISKPVGWSSIRSFHSSSANYMFEKILIANRGEIACRVMETCKK
MGIKTVAIHSDVDKNAKHVNMADEAICVGPAPTSESYLNIDAIVEAIKMTGAQAVHPGYG
FLSENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIGEVDGMDH
VIKIANEIGY---

---fhftryslhcqg*kcsslhsflstr*x*n*rrcqwcqw**flkihgsihrsrerwss
h*gi*ikfsrcnstiyqikhwwylssfpnsr*nfhilhpsipwfkdsshrfisrrrfxlp
ihas*knc*xfkxfnltnawyypxfgr*cr**scxwsrtlyr*snenakcsqsskrl*n*
inqc*twssrfc**sfnxfk*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF307 (VHF307Q) /CSM/VH/VHF3-A/VHF307Q.Seq.d/ 2141 0.0
VHK744 (VHK744Q) /CSM/VH/VHK7-B/VHK744Q.Seq.d/ 1094 0.0
VHD495 (VHD495Q) /CSM/VH/VHD4-D/VHD495Q.Seq.d/ 1094 0.0
VHB805 (VHB805Q) /CSM/VH/VHB8-A/VHB805Q.Seq.d/ 1094 0.0
VHB466 (VHB466Q) /CSM/VH/VHB4-C/VHB466Q.Seq.d/ 1094 0.0
VHO520 (VHO520Q) /CSM/VH/VHO5-A/VHO520Q.Seq.d/ 1088 0.0
VHK879 (VHK879Q) /CSM/VH/VHK8-D/VHK879Q.Seq.d/ 1088 0.0
VHK778 (VHK778Q) /CSM/VH/VHK7-D/VHK778Q.Seq.d/ 1088 0.0
VFC516 (VFC516Q) /CSM/VF/VFC5-A/VFC516Q.Seq.d/ 1088 0.0
AHL210 (AHL210Q) /CSM/AH/AHL2-A/AHL210Q.Seq.d/ 1088 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ426738) Dictyostelium discoideum cDNA clone:ddv60g05, 5' ... 1088 0.0 2
(BJ424589) Dictyostelium discoideum cDNA clone:ddv52n20, 5' ... 1088 0.0 2
(BJ424576) Dictyostelium discoideum cDNA clone:ddv52l19, 5' ... 1088 0.0 2
(BJ421240) Dictyostelium discoideum cDNA clone:ddv41n01, 5' ... 1088 0.0 2
(BJ418820) Dictyostelium discoideum cDNA clone:ddv34j02, 5' ... 1088 0.0 1
(BJ411885) Dictyostelium discoideum cDNA clone:ddv6o03, 5' e... 1088 0.0 1
(BJ336177) Dictyostelium discoideum cDNA clone:dda53c04, 5' ... 1088 0.0 2
(BJ329301) Dictyostelium discoideum cDNA clone:dda24b14, 5' ... 1088 0.0 1
(BJ327736) Dictyostelium discoideum cDNA clone:dda21g16, 5' ... 1088 0.0 2
(BJ327188) Dictyostelium discoideum cDNA clone:dda19d17, 5' ... 1078 0.0 1
dna update 2008.10.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX088652_4(BX088652|pid:none) Zebrafish DNA sequence from clone ... 222 2e-56
BC006915_1(BC006915|pid:none) Mus musculus propionyl-Coenzyme A ... 217 6e-55
AY046947_1(AY046947|pid:none) Mus musculus propionyl CoA-carboxy... 217 6e-55
(Q91ZA3) RecName: Full=Propionyl-CoA carboxylase alpha chain, mi... 217 6e-55
M22631_1(M22631|pid:none) Rat alpha-propionyl-CoA carboxylase mR... 215 2e-54
A34337(A34337;A30871)propionyl-CoA carboxylase (EC 6.4.1.3) alph... 215 2e-54
AB171076_1(AB171076|pid:none) Macaca fascicularis brain cDNA clo... 211 5e-53
(P05165) RecName: Full=Propionyl-CoA carboxylase alpha chain, mi... 210 7e-53
AF385926_1(AF385926|pid:none) Homo sapiens propionyl-CoA carboxy... 210 7e-53
FN357591_3(FN357591|pid:none) Schistosoma mansoni genome sequenc... 210 9e-53
protein update 2009. 7. 2
PSORT

psg: 0.72 gvh: 0.47 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
16.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VHF307 is mit

5' end seq. ID VHF307F
5' end seq.
>VHF307F.Seq
ATTGATAAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAA
AACCAGTTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTG
AAAAGATTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAA
AGATGGGTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAA
ATATGGCAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATA
TTGATGCAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATG
GATTTTTATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCA
TTGGACCAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTG
CCAAAGAGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATC
ATGTTATAAAGATTGCCAACGAGATTGGTTATCNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID VHF307Z
3' end seq.
>VHF307Z.Seq
NNNNNNNNNNTNTTCCATTTCACCAGATATTCTTTACATTGCCAAGGTTGAAAATGTTCG
TCACTCCATTCATTTCTATCCACTCGATAATTNTGAAACTGACGCCGCTGCCAATGGTGC
CAATGGTGATGATTCCTCAAGATTCATGGTTCAATTCATCGATCAAGAGAAAGATGGTCA
AGTCATTAAGGAATTTGAATTAAATTTAGTCGATGCAACTCCACAATTTATCAAATTAAA
CATTGGTGGTATCTCTCATCGTTTCCAAATTCACGATAAAACTTCCACATCCTACACCCT
TCAATTCCATGGTTCAAAGATTCCAGTCACCGTTTTATCTCCAGAAGAAGATTTANTCTG
CCAATACATGCCAGTTAAAAAAACTGTTGANTCTTCAAANTCTTTAATCTCACCAATGCC
TGGTACTATCCTNTCTTTGGCCGTTAATGTAGGTGATAAAGTTGTCNTTGGTCAAGAACT
TTGTATCGTTGAAGCAATGAAAATGCAAAATGTTCTCAGAGCTCCAAAAGATTGTGAAAT
TAAATCAATCAATGTTAAACCTGGTCAAGTCGTTTCTGTTGATGAAGTTTTAATNATTTT
AAATAA
Length of 3' end seq. 606
Connected seq. ID VHF307P
Connected seq.
>VHF307P.Seq
ATTGATAAATAAATACAAAAAAAATGAACAGATTATTTAAAGTTCAATCTGTAATTTCAA
AACCAGTTGGATGGTCAAGCATTAGAAGTTTTCACTCATCTAGTGCAAACTATATGTTTG
AAAAGATTTTAATTGCAAATAGAGGTGAAATTGCATGTAGAGTTATGGAAACATGTAAAA
AGATGGGTATTAAAACAGTAGCAATTCATAGTGATGTTGATAAGAATGCTAAACATGTAA
ATATGGCAGATGAAGCAATTTGTGTTGGACCAGCACCAACATCAGAATCATATTTGAATA
TTGATGCAATTGTAGAGGCAATTAAGATGACAGGTGCACAAGCAGTACATCCAGGTTATG
GATTTTTATCAGAGAATTCAAGATTTGTAAAAGAGTTGGAGAATATTGGTGTAACATTCA
TTGGACCAGGATCATATGCTATGCATGCATTAGGAGATAAGATCGAATCAAAACGTATTG
CCAAAGAGGCAGGTGTTAGTGTTGTACCAGGTTACATTGGAGAAGTCGATGGTATGGATC
ATGTTATAAAGATTGCCAACGAGATTGGTTATC----------TNTTCCATTTCACCAGA
TATTCTTTACATTGCCAAGGTTGAAAATGTTCGTCACTCCATTCATTTCTATCCACTCGA
TAATTNTGAAACTGACGCCGCTGCCAATGGTGCCAATGGTGATGATTCCTCAAGATTCAT
GGTTCAATTCATCGATCAAGAGAAAGATGGTCAAGTCATTAAGGAATTTGAATTAAATTT
AGTCGATGCAACTCCACAATTTATCAAATTAAACATTGGTGGTATCTCTCATCGTTTCCA
AATTCACGATAAAACTTCCACATCCTACACCCTTCAATTCCATGGTTCAAAGATTCCAGT
CACCGTTTTATCTCCAGAAGAAGATTTANTCTGCCAATACATGCCAGTTAAAAAAACTGT
TGANTCTTCAAANTCTTTAATCTCACCAATGCCTGGTACTATCCTNTCTTTGGCCGTTAA
TGTAGGTGATAAAGTTGTCNTTGGTCAAGAACTTTGTATCGTTGAAGCAATGAAAATGCA
AAATGTTCTCAGAGCTCCAAAAGATTGTGAAATTAAATCAATCAATGTTAAACCTGGTCA
AGTCGTTTCTGTTGATGAAGTTTTAATNATTTTAAATAA
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -