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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF294
Library VH
(Link to library)
Clone ID VHF294
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHF294P
(Link to Original site)
Representative DNA sequence 
>VHF294 (VHF294Q) /CSM/VH/VHF2-D/VHF294Q.Seq.d/
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCAXXXXXXXXXXGATTGTCATGTGTCCATCAAAAAATTC
TTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTANTGNTANTCTTGCTTNAGNTGN
TCTTGGTGGTTTTGGTTTCCTACGTTTTTAAGAATCCAGATTTCTAACNAAAANTATTAA
AAATGGTTGGTTTTTCAAAGGTCGGTCCNAAATATAGTGTTATCNGTATTAAACCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**RFWFNMEQCII
QWVMFYS---

---DCHVSIKKFFKWWQRLDRWCCXXXSCXXXSWWFWFPTFLRIQISNXXY*kwlvfqrs
vxnivlsvlnq
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfffticlykqiggnykmkissilfifiaiivglalsqntiptykqnsinwkqfqplyt
nkddyvlivdtrsknvlkrstnggidwssnvldkqgniiygnagyyqrddnimvvnfpsy
gktqisvsndagqtfstsavfphkvvsvsphldieglviarsdnfilisedfgltwnnas
sng*cfi---

---DCHVSIKKFFKWWQRLDRWCCXXXSCXXXSWWFWFPTFLRIQISNXXY*kwlvfqrs
vxnivlsvlnq

Frame B:
yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmhh
pmgdvlf---

---ivmcpsknsssggkgwiagvvxxxlaxxxlggfgflrf*esrfltkxikngwffkgr
sxi*cyxy*tk

Frame C:
iiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**RFWFNMEQCII
QWVMFYS---

---lscvhqkilqvvakvgslvllxxxllxxxlvvlvsyvfknpdf*xkxlkmvgfskvg
pkysvixikp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF294 (VHF294Q) /CSM/VH/VHF2-D/VHF294Q.Seq.d/                       1423   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1116   0.0
VHP637 (VHP637Q) /CSM/VH/VHP6-B/VHP637Q.Seq.d/                       1116   0.0
VHP190 (VHP190Q) /CSM/VH/VHP1-D/VHP190Q.Seq.d/                       1116   0.0
VHO879 (VHO879Q) /CSM/VH/VHO8-D/VHO879Q.Seq.d/                       1116   0.0
VHO858 (VHO858Q) /CSM/VH/VHO8-C/VHO858Q.Seq.d/                       1116   0.0
VHL891 (VHL891Q) /CSM/VH/VHL8-D/VHL891Q.Seq.d/                       1116   0.0
VHL696 (VHL696Q) /CSM/VH/VHL6-D/VHL696Q.Seq.d/                       1116   0.0
VHK832 (VHK832Q) /CSM/VH/VHK8-B/VHK832Q.Seq.d/                       1116   0.0
VHK602 (VHK602Q) /CSM/VH/VHK6-A/VHK602Q.Seq.d/                       1116   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427690) Dictyostelium discoideum cDNA clone:ddv63d08, 5' ...  1116   0.0    1
(BJ427416) Dictyostelium discoideum cDNA clone:ddv62i10, 5' ...  1116   0.0    1
(BJ427238) Dictyostelium discoideum cDNA clone:ddv61c23, 5' ...  1116   0.0    1
(BJ426993) Dictyostelium discoideum cDNA clone:ddv60n20, 5' ...  1116   0.0    1
(BJ426873) Dictyostelium discoideum cDNA clone:ddv60d16, 5' ...  1116   0.0    1
(BJ425203) Dictyostelium discoideum cDNA clone:ddv54o24, 5' ...  1116   0.0    1
(BJ425158) Dictyostelium discoideum cDNA clone:ddv54f24, 5' ...  1116   0.0    1
(BJ424446) Dictyostelium discoideum cDNA clone:ddv52p08, 5' ...  1116   0.0    1
(BJ424303) Dictyostelium discoideum cDNA clone:ddv52c02, 5' ...  1116   0.0    1
(BJ424242) Dictyostelium discoideum cDNA clone:ddv51g24, 5' ...  1116   0.0    1
dna update 2008.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000512_3608(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...    35   2.1
CP000447_3980(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    35   3.5
EU719193_1(EU719193|pid:none) Aspergillus niger strain CBS 120.4...    35   3.5
CP001390_1563(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    34   4.6
CP000485_3011(CP000485|pid:none) Bacillus thuringiensis str. Al ...    34   6.0
CU466930_788(CU466930|pid:none) Candidatus Cloacamonas acidamino...    34   6.0
CP001177_3378(CP001177|pid:none) Bacillus cereus AH187, complete...    34   6.0
CP000227_3230(CP000227|pid:none) Bacillus cereus Q1, complete ge...    34   6.0
AE017194_3523(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    34   6.0
CP000806_4426(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   7.8
protein update 2009. 7. 2
PSORT 

 psg: 0.92  gvh: 0.48  alm: 0.47  top: 0.37  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for VHF294 is cyt
5' end seq. ID VHF294F
5' end seq. 
>VHF294F.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCANNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID VHF294Z
3' end seq. 
>VHF294Z.Seq
NNNNNNNNNNGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGA
TCGCTGGTGTTGTTANTGNTANTCTTGCTTNAGNTGNTCTTGGTGGTTTTGGTTTCCTAC
GTTTTTAAGAATCCAGATTTCTAACNAAAANTATTAAAAATGGTTGGTTTTTCAAAGGTC
GGTCCNAAATATAGTGTTATCNGTATTAAACCAAA
Length of 3' end seq. 215
Connected seq. ID VHF294P
Connected seq. 
>VHF294P.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCA----------GATTGTCATGTGTCCATCAAAAAATTC
TTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTANTGNTANTCTTGCTTNAGNTGN
TCTTGGTGGTTTTGGTTTCCTACGTTTTTAAGAATCCAGATTTCTAACNAAAANTATTAA
AAATGGTTGGTTTTTCAAAGGTCGGTCCNAAATATAGTGTTATCNGTATTAAACCAAA
Length of connected seq. 768
Full length Seq ID -
Full length Seq. -
Length of full length seq. -