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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF289
Library VH
(Link to library)
Clone ID VHF289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID VHF289P
(Link to Original site)
Representative DNA sequence 
>VHF289 (VHF289Q) /CSM/VH/VHF2-D/VHF289Q.Seq.d/
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG
TATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGA
CTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATG
GGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGG
GTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTG
CCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAA
TTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGC
AGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTA
TCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGA
GGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATTXXXXXXXXXXCCNTTTGTACACACCGC
CNGTCGATCTTACCGATCGAATGATACGGTAAAGTTAACGGATCGTTTTATCTGTGGCAA
CNCTGATATAAATTAAAAGTTATTTAAATNTCATTGTTTAGAGGAAGGAGAAGTCGTAAC
AAGGTATCCGTAGGAACNTGCGGATGGATCATTTTTTATCTTAATATCATAAACTTTATG
TTTTTTTGGATAATGGAACTGCTTGCGTATAAAGAAATTAGGCTTTTTAATTAAGGTTTA
AGAGTAAGTTGGCTTGTCAGATTTATTGTCTAAAAAAAAATAGCAAATCATATATACATA
AATAATGTCATCAGCTGCCACTAAACCAGTTAAAAGATCAGGTATCATTAAAGGTTTCAA
CAAAGGTCATGCAGTAGCTAAACGTACTGTTACNTCAACNTTCAAAAAACAAGTTGTCAC
CAAACGTGTTGCTGCCATCCGTGATGTTANTCGTGAAATCTCCGGTTTCTCCCCATACGA
ACGTCGTGTTTATGAGTTATTAAAATCAGGTTTAGATAAACGTGCCNTCAAAGTTGCCAA
GAAGAGATTAGGTTCAATCCAAGCTGGTAAAAAGAAGAGAGATGATATTGCTAACATCAA
CAGAAAAGCCTCCGCC
sequence update 2002.10.25
Translated Amino Acid sequence 
lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqam
gdwqrklsdy*hstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgnge
lgfdsgega*emattstegsrranysipirgssdnkyqylsflegn*NEHKLKLLINTIG
GQVWCQQPAVI---

---PFVHTAXRSYRSNDTVKLTDRFICGNXDIN*klfkxhcleegevvtryp*exadgsf
filis*tlcffg*wnclrikklgflikv*e*vglsdllskkk*qiiyt*imssaatkpvk
rsgiikgfnkghavakrtvtstfkkqvvtkrvaairdvxreisgfspyerrvyellksgl
dkraxkvakkrlgsiqagkkkrddianinrkasa
Translated Amino Acid sequence (All Frames) 
Frame A:
lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqam
gdwqrklsdy*hstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgnge
lgfdsgega*emattstegsrranysipirgssdnkyqylsflegn*NEHKLKLLINTIG
GQVWCQQPAVI---

---PFVHTAXRSYRSNDTVKLTDRFICGNXDIN*klfkxhcleegevvtryp*exadgsf
filis*tlcffg*wnclrikklgflikv*e*vglsdllskkk*qiiyt*imssaatkpvk
rsgiikgfnkghavakrtvtstfkkqvvtkrvaairdvxreisgfspyerrvyellksgl
dkraxkvakkrlgsiqagkkkrddianinrkasa

Frame B:
wlilpvviclsqrlshaclsinsctmklqtahynsdklidfrvlpfg*pq*igantykrw
vtgngssaiisilpmpsgfg*yriilqiedlsstsllchcpinfrwygiglpwl*rvtgn
*gsiperepekwlpllrkaagaqitqsqygevvtinintypfwraiemntn*ns*ltqle
gksgasspr*---

---xlytppvdltdrmir*s*rivlsvatli*iksylnxiv*rkeks*qgirrnxrmdhf
ls*yhklyvfldngtacv*rn*af*lrfksklacqiyclkknsksyihk*chqlplnqlk
dqvslkvstkvmq*lnvllxqxsknklspnvllpsvmlxvkspvsphtnvvfmsy*nqv*
invpsklprrd*vqsklvkrremilltstekpp

Frame C:
g*scq*syaclkd*amhv*v*ilvr*ncrrlittvin**tfgfylldnrsksglihtsdg
*lateaqrllafyqclrvlgdte*ycrsriylrqvycvtalstfdgtvlayhgcng*rgi
rvrfrrgslrngyhfygrqqarkllnpntgk**q*isipilfggqlk*tqiktln*hnwr
aslvpaargn---

---xcthrxsilpie*ygkvngsfylwqx*yklkvi*xslfrgrrsrnkvsvgtcgwiif
ylniinfmffwimellaykeirlfn*glrvswlvrfiv*kkianhiyinnvisch*ts*k
iryh*rfqqrscss*tycyxnxqktschqtccchp*cxs*nlrflpirtscl*vikirfr
*tcxqscqeeirfnpsw*keer*yc*hqqkslr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF289 (VHF289Q) /CSM/VH/VHF2-D/VHF289Q.Seq.d/                       2202   0.0
SFK216 (SFK216Q) /CSM/SF/SFK2-A/SFK216Q.Seq.d/                       1136   0.0
CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/                       1136   0.0
CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/                       1136   0.0
CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/                       1136   0.0
CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/                       1128   0.0
VHJ647 (VHJ647Q) /CSM/VH/VHJ6-B/VHJ647Q.Seq.d/                       1120   0.0
VHG238 (VHG238Q) /CSM/VH/VHG2-B/VHG238Q.Seq.d/                       1120   0.0
VHE381 (VHE381Q) /CSM/VH/VHE3-D/VHE381Q.Seq.d/                       1120   0.0
VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/                       1120   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ421110) Dictyostelium discoideum cDNA clone:ddv41a24, 5' ...  1136   0.0    1
(BJ390110) Dictyostelium discoideum cDNA clone:dds21o04, 5' ...  1136   0.0    1
(BJ369404) Dictyostelium discoideum cDNA clone:ddc50o12, 5' ...  1136   0.0    1
(BJ368609) Dictyostelium discoideum cDNA clone:ddc47j10, 5' ...  1136   0.0    1
(BJ365576) Dictyostelium discoideum cDNA clone:ddc35g24, 5' ...  1136   0.0    1
(BJ366646) Dictyostelium discoideum cDNA clone:ddc39b19, 5' ...  1128   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1116   0.0    1
(AM168071) Dictyostelium discoideum 18S rRNA gene, isolate NC4.  1116   0.0    1
(AM168040) Dictyostelium discoideum 18S rRNA gene, isolate 9...  1116   0.0    1
(BJ423790) Dictyostelium discoideum cDNA clone:ddv50m12, 5' ...  1116   0.0    1
dna update 2008.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55AQ9) RecName: Full=60S ribosomal protein L36;  &AC117072_13(...   191   3e-47
EU962099_1(EU962099|pid:none) Zea mays clone 240197 60S ribosoma...    93   2e-17
BT069462_1(BT069462|pid:none) Zea mays full-length cDNA clone ZM...    93   2e-17
AC117265_4(AC117265|pid:none) Oryza sativa (japonica cultivar-gr...    93   2e-17
EF575773_1(EF575773|pid:none) Oryza sativa (indica cultivar-grou...    93   2e-17
AY846819_1(AY846819|pid:none) Triticum aestivum ribosomal protei...    91   8e-17
EU931215_1(EU931215|pid:none) Rheum australe ribosomal protein L...    91   8e-17
AC146755_3(AC146755|pid:none) Medicago truncatula clone mth2-15i...    91   1e-16
EF146033_1(EF146033|pid:none) Populus trichocarpa clone WS0115_A...    90   1e-16
BT070535_1(BT070535|pid:none) Picea sitchensis clone WS02734_P08...    90   1e-16
protein update 2009. 7. 2
PSORT 

 psg: 0.87  gvh: 0.53  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHF289 is cyt
5' end seq. ID VHF289F
5' end seq. 
>VHF289F.Seq
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG
TATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGA
CTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATG
GGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGG
GTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTG
CCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAA
TTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGC
AGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTA
TCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGA
GGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATTNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID VHF289Z
3' end seq. 
>VHF289Z.Seq
NNNNNNNNNNCCNTTTGTACACACCGCCNGTCGATCTTACCGATCGAATGATACGGTAAA
GTTAACGGATCGTTTTATCTGTGGCAACNCTGATATAAATTAAAAGTTATTTAAATNTCA
TTGTTTAGAGGAAGGAGAAGTCGTAACAAGGTATCCGTAGGAACNTGCGGATGGATCATT
TTTTATCTTAATATCATAAACTTTATGTTTTTTTGGATAATGGAACTGCTTGCGTATAAA
GAAATTAGGCTTTTTAATTAAGGTTTAAGAGTAAGTTGGCTTGTCAGATTTATTGTCTAA
AAAAAAATAGCAAATCATATATACATAAATAATGTCATCAGCTGCCACTAAACCAGTTAA
AAGATCAGGTATCATTAAAGGTTTCAACAAAGGTCATGCAGTAGCTAAACGTACTGTTAC
NTCAACNTTCAAAAAACAAGTTGTCACCAAACGTGTTGCTGCCATCCGTGATGTTANTCG
TGAAATCTCCGGTTTCTCCCCATACGAACGTCGTGTTTATGAGTTATTAAAATCAGGTTT
AGATAAACGTGCCNTCAAAGTTGCCAAGAAGAGATTAGGTTCAATCCAAGCTGGTAAAAA
GAAGAGAGATGATATTGCTAACATCAACAGAAAAGCCTCCGCC
Length of 3' end seq. 643
Connected seq. ID VHF289P
Connected seq. 
>VHF289P.Seq
CTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG
TATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAATAGA
CTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCGATG
GGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTTTGG
GTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTG
CCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAA
TTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGC
AGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTA
TCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGA
GGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATT----------CCNTTTGTACACACCGC
CNGTCGATCTTACCGATCGAATGATACGGTAAAGTTAACGGATCGTTTTATCTGTGGCAA
CNCTGATATAAATTAAAAGTTATTTAAATNTCATTGTTTAGAGGAAGGAGAAGTCGTAAC
AAGGTATCCGTAGGAACNTGCGGATGGATCATTTTTTATCTTAATATCATAAACTTTATG
TTTTTTTGGATAATGGAACTGCTTGCGTATAAAGAAATTAGGCTTTTTAATTAAGGTTTA
AGAGTAAGTTGGCTTGTCAGATTTATTGTCTAAAAAAAAATAGCAAATCATATATACATA
AATAATGTCATCAGCTGCCACTAAACCAGTTAAAAGATCAGGTATCATTAAAGGTTTCAA
CAAAGGTCATGCAGTAGCTAAACGTACTGTTACNTCAACNTTCAAAAAACAAGTTGTCAC
CAAACGTGTTGCTGCCATCCGTGATGTTANTCGTGAAATCTCCGGTTTCTCCCCATACGA
ACGTCGTGTTTATGAGTTATTAAAATCAGGTTTAGATAAACGTGCCNTCAAAGTTGCCAA
GAAGAGATTAGGTTCAATCCAAGCTGGTAAAAAGAAGAGAGATGATATTGCTAACATCAA
CAGAAAAGCCTCCGCC
Length of connected seq. 1206
Full length Seq ID -
Full length Seq. -
Length of full length seq. -