VHF275
Library VH
(Link to library)
Clone ID VHF275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF275 (VHF275Q) /CSM/VH/VHF2-D/VHF275Q.Seq.d/
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSE
AASYQCEII---


Translated Amino Acid sequence (All Frames)
Frame A:
ivtnk**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*ivmveli
iyq*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqvahilvvg
efqhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynliqfnyqvvhin*klesldq
rqqvinvks*---


Frame B:
*lqinneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikllwwn**
ytnr**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwhif*wlg
nfnifiey**nhfsymfryckvldrfnsdar*fiwigiti*fnsiikwytsiks*nhwir
gsklsm*nhn---


Frame C:
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSE
AASYQCEII---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/ 1134 0.0
VHO890 (VHO890Q) /CSM/VH/VHO8-D/VHO890Q.Seq.d/ 1134 0.0
VHO194 (VHO194Q) /CSM/VH/VHO1-D/VHO194Q.Seq.d/ 1134 0.0
VHL405 (VHL405Q) /CSM/VH/VHL4-A/VHL405Q.Seq.d/ 1134 0.0
VHH656 (VHH656Q) /CSM/VH/VHH6-C/VHH656Q.Seq.d/ 1134 0.0
VHG782 (VHG782Q) /CSM/VH/VHG7-D/VHG782Q.Seq.d/ 1134 0.0
VHF275 (VHF275Q) /CSM/VH/VHF2-D/VHF275Q.Seq.d/ 1134 0.0
VHE155 (VHE155Q) /CSM/VH/VHE1-C/VHE155Q.Seq.d/ 1134 0.0
VHC360 (VHC360Q) /CSM/VH/VHC3-C/VHC360Q.Seq.d/ 1134 0.0
VHB803 (VHB803Q) /CSM/VH/VHB8-A/VHB803Q.Seq.d/ 1134 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427426) Dictyostelium discoideum cDNA clone:ddv62k09, 5' ... 1017 0.0 2
(BJ427088) Dictyostelium discoideum cDNA clone:ddv61a10, 5' ... 1017 0.0 2
(BJ426950) Dictyostelium discoideum cDNA clone:ddv60d24, 5' ... 1017 0.0 2
(BJ426686) Dictyostelium discoideum cDNA clone:ddv59k23, 5' ... 1017 0.0 2
(BJ425759) Dictyostelium discoideum cDNA clone:ddv56c20, 5' ... 1017 0.0 2
(BJ425057) Dictyostelium discoideum cDNA clone:ddv54a18, 5' ... 1017 0.0 2
(BJ424650) Dictyostelium discoideum cDNA clone:ddv53j02, 5' ... 1017 0.0 2
(BJ422677) Dictyostelium discoideum cDNA clone:ddv46o14, 5' ... 1017 0.0 2
(BJ422080) Dictyostelium discoideum cDNA clone:ddv44d21, 5' ... 1017 0.0 2
(BJ421125) Dictyostelium discoideum cDNA clone:ddv41e20, 5' ... 1017 0.0 2
dna update 2008.10.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi... 41 0.027
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo... 37 0.30
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 1.1
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome... 35 1.1
CP000269_2198(CP000269|pid:none) Janthinobacterium sp. Marseille... 35 1.5
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 34 2.5
CP000614_1118(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 34 2.5
AM747720_2803(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 34 2.5
AM398681_152(AM398681|pid:none) Flavobacterium psychrophilum JIP... 34 2.5
AB1151(AB1151) internalin proteins, probable peptidoglycan bound... 34 3.3
protein update 2009. 7. 2
PSORT

psg: 0.98 gvh: 0.73 alm: 0.41 top: 0.20 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VHF275 is exc

5' end seq. ID VHF275F
5' end seq.
>VHF275F.Seq
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACANNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -