VHF272
Library VH
(Link to library)
Clone ID VHF272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15754-1
Original site URL
Representative seq. ID VHF272P
(Link to Original site)
Representative DNA sequence
>VHF272 (VHF272Q) /CSM/VH/VHF2-C/VHF272Q.Seq.d/
ATTTTNTTTTCATCACAATAATAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAA
ATTCTGATTGGAAGAATTGGGGTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTG
AAGATTATGGTGGTGAACCATGGACCTACTTTCCACACGATCATGCTAGATCACGTGCAT
ATAGATGGTCAGAGGATAGTATTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAG
GTTTAGCATTTTGGAATGAAAAAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTG
GACCAGAAGGAAATCATGGTGAAGATGTAAAAGAACATTATTTCTATTTAGATAATACAC
CAACACATTCCTATGCCAAAATGTTATATAAATATCCAATGAATGAATATCCATATAGTG
ATTTAGTATCAACCAATGCACAACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATA
CTGGTATCTTTGATAAGGATGAATAXXXXXXXXXXTTCGTAAAGTATAGACNNAATTTAG
TGAAAAACATTGCTCCATTCACTGCTTTGGGTCAAAATAAATCACGTTTACTCTCAATTG
TAAATCGTGAGAAATTGGAATTAATCTTAAAGAAAATGTTGGATGAAGATTGGTTCTTNT
CTGAAAATGGTATTAGATCATTATCAAAACATCACAAGGATCATCCATTCACTTTTGCTG
AGATGGATGCTTGTGTTGGTTATGTACCTGGCGAGAGTGATGTTCATATCATGGGTTCAA
ATAGTAATTGGAGAGGTCCAGTTTGGTTTGCCGTAAATTATCTCATGATTCAATCACTTC
GTACCTATCATGAATACTATGGTGATGAATTCCAAATTGAATATCCAACAAANTCTGGTA
ACNTCGTAACTTTGGATATCGTAGCCGATGATATNTCTAAACGTCTCATTAGTATCTTCC
AAGAGAATCAAGATGGTACTAGAAAATTTGCTGGTGGTAAACCAATTTTCGCAAAAAAAC
ATTGGAAAGATCATATATTGTTCAATGAATATTTCCATGGTGATAGTGGTGCTGGTCTTG
GTGCTTCTCACCAGACTGGTTGGACTGC
sequence update 2002.10.25
Translated Amino Acid sequence
FXFITIIMEQKRLDDSLLRNSDWKNWGTYVSDRQWATVREDYGGEPWTYFPHDHARSRAY
RWSEDSIGGFCNRFQNICLGLAFWNEKDPIIKERFFGLGGPEGNHGEDVKEHYFYLDNTP
THSYAKMLYKYPMNEYPYSDLVSTNAQRGKQDPEYEIEDTGIFDKDE---

---FVKYRXNLVKNIAPFTALGQNKSRLLSIVNREKLELILKKMLDEDWFXSENGIRSLS
KHHKDHPFTFAEMDACVGYVPGESDVHIMGSNSNWRGPVWFAVNYLMIQSLRTYHEYYGD
EFQIEYPTXSGNXVTLDIVADDXSKRLISIFQENQDGTRKFAGGKPIFAKKHWKDHILFN
EYFHGDSGAGLGASHQTGWT


Translated Amino Acid sequence (All Frames)
Frame A:
ixfssq**wnkkd*mihy*eiligrigvpm*vidngqlfvkimvvnhgptfhtimldhvh
idgqrivlvdfvidfkifv*v*hfgmkkiqllkrdfldlvdqkeimvkm*kniisi*iih
qhipmpkcyiniq*mnihivi*yqpmhnvvnkiqsmklkilvslirmn---

---FVKYRXNLVKNIAPFTALGQNKSRLLSIVNREKLELILKKMLDEDWFXSENGIRSLS
KHHKDHPFTFAEMDACVGYVPGESDVHIMGSNSNWRGPVWFAVNYLMIQSLRTYHEYYGD
EFQIEYPTXSGNXVTLDIVADDXSKRLISIFQENQDGTRKFAGGKPIFAKKHWKDHILFN
EYFHGDSGAGLGASHQTGWT

Frame B:
fxfhhnnngtkkir*fiikkf*leelgylck**tmgncs*rlww*tmdllstrsc*itci
*mvrg*ywwil**iskylfrfsile*krsny*reifwtwwtrrksw*rckrtlflfr*yt
ntflcqnvi*isne*isi**fsinqcttw*trsrv*n*rywyl**g*i---

---s*sidxi**ktllhsllwvkinhvysql*ivrnwn*s*rkcwmkigsxlkmvldhyq
nitriihslllrwmlvlvmylarvmfiswvqivigevqfglp*iis*fnhfvpimntmvm
nsklniqqxlvts*lwis*pmixlnvslvsskrikmvlenllvvnqfsqknigkiiycsm
nismvivvlvlvlltrlvgl

Frame C:
FXFITIIMEQKRLDDSLLRNSDWKNWGTYVSDRQWATVREDYGGEPWTYFPHDHARSRAY
RWSEDSIGGFCNRFQNICLGLAFWNEKDPIIKERFFGLGGPEGNHGEDVKEHYFYLDNTP
THSYAKMLYKYPMNEYPYSDLVSTNAQRGKQDPEYEIEDTGIFDKDE---

---rkv*txfsekhcsihcfgsk*itftlncks*eiginlkenvg*rlvlx*kwy*iiik
tsqgssihfc*dgclcwlctwre*csyhgfk**lersslvcrklshdsitsyls*ilw**
ipn*isnkxw*xrnfgyrsr*yx*tsh*ylpresrwy*kicww*tnfrkktlersyivq*
ifpw**wcwswcfspdwldc

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF272 (VHF272Q) /CSM/VH/VHF2-C/VHF272Q.Seq.d/ 2054 0.0
VHN363 (VHN363Q) /CSM/VH/VHN3-C/VHN363Q.Seq.d/ 1090 0.0
VHL283 (VHL283Q) /CSM/VH/VHL2-D/VHL283Q.Seq.d/ 1090 0.0
VHL253 (VHL253Q) /CSM/VH/VHL2-C/VHL253Q.Seq.d/ 1090 0.0
VHK382 (VHK382Q) /CSM/VH/VHK3-D/VHK382Q.Seq.d/ 1090 0.0
VHI240 (VHI240Q) /CSM/VH/VHI2-B/VHI240Q.Seq.d/ 1090 0.0
VHH211 (VHH211Q) /CSM/VH/VHH2-A/VHH211Q.Seq.d/ 1090 0.0
VHE831 (VHE831Q) /CSM/VH/VHE8-B/VHE831Q.Seq.d/ 1090 0.0
VHE202 (VHE202Q) /CSM/VH/VHE2-A/VHE202Q.Seq.d/ 1090 0.0
VHD431 (VHD431Q) /CSM/VH/VHD4-B/VHD431Q.Seq.d/ 1090 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439818) Dictyostelium discoideum cDNA clone:ddv41o18, 3' ... 950 0.0 2
(BJ446100) Dictyostelium discoideum cDNA clone:ddv61l16, 3' ... 942 0.0 2
(BJ445064) Dictyostelium discoideum cDNA clone:ddv58h07, 3' ... 942 0.0 3
(BJ444959) Dictyostelium discoideum cDNA clone:ddv58b05, 3' ... 942 0.0 3
(BJ444866) Dictyostelium discoideum cDNA clone:ddv57n15, 3' ... 942 0.0 2
(BJ443693) Dictyostelium discoideum cDNA clone:ddv53e22, 3' ... 942 0.0 2
(BJ443638) Dictyostelium discoideum cDNA clone:ddv53i14, 3' ... 942 0.0 2
(BJ443531) Dictyostelium discoideum cDNA clone:ddv53a09, 3' ... 942 0.0 2
(BJ443060) Dictyostelium discoideum cDNA clone:ddv51d21, 3' ... 942 0.0 2
(BJ443013) Dictyostelium discoideum cDNA clone:ddv51k17, 3' ... 942 0.0 3
dna update 2008.10.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY120852_6(AY120852|pid:none) Synechococcus sp. PCC 7942 PacS, d... 239 1e-61
BX908798_121(BX908798|pid:none) Parachlamydia-related symbiont U... 233 9e-60
CP001287_390(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 229 2e-58
AM236080_63(AM236080|pid:none) Rhizobium leguminosarum bv. vicia... 228 3e-58
CP000383_3377(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 228 3e-58
CP001344_1586(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 226 8e-58
CP001344_4154(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 226 8e-58
BX294151_247(BX294151|pid:none) Rhodopirellula baltica SH 1 comp... 226 1e-57
CT573073_696(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 224 4e-57
CP000473_7467(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 224 4e-57
protein update 2009. 7. 2
PSORT

psg: 0.40 gvh: 0.30 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for VHF272 is nuc

5' end seq. ID VHF272F
5' end seq.
>VHF272F.Seq
ATTTTNTTTTCATCACAATAATAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAA
ATTCTGATTGGAAGAATTGGGGTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTG
AAGATTATGGTGGTGAACCATGGACCTACTTTCCACACGATCATGCTAGATCACGTGCAT
ATAGATGGTCAGAGGATAGTATTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAG
GTTTAGCATTTTGGAATGAAAAAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTG
GACCAGAAGGAAATCATGGTGAAGATGTAAAAGAACATTATTTCTATTTAGATAATACAC
CAACACATTCCTATGCCAAAATGTTATATAAATATCCAATGAATGAATATCCATATAGTG
ATTTAGTATCAACCAATGCACAACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATA
CTGGTATCTTTGATAAGGATGAATANNNNNNNNNN
Length of 5' end seq. 515
3' end seq. ID VHF272Z
3' end seq.
>VHF272Z.Seq
NNNNNNNNNNTTCGTAAAGTATAGACNNAATTTAGTGAAAAACATTGCTCCATTCACTGC
TTTGGGTCAAAATAAATCACGTTTACTCTCAATTGTAAATCGTGAGAAATTGGAATTAAT
CTTAAAGAAAATGTTGGATGAAGATTGGTTCTTNTCTGAAAATGGTATTAGATCATTATC
AAAACATCACAAGGATCATCCATTCACTTTTGCTGAGATGGATGCTTGTGTTGGTTATGT
ACCTGGCGAGAGTGATGTTCATATCATGGGTTCAAATAGTAATTGGAGAGGTCCAGTTTG
GTTTGCCGTAAATTATCTCATGATTCAATCACTTCGTACCTATCATGAATACTATGGTGA
TGAATTCCAAATTGAATATCCAACAAANTCTGGTAACNTCGTAACTTTGGATATCGTAGC
CGATGATATNTCTAAACGTCTCATTAGTATCTTCCAAGAGAATCAAGATGGTACTAGAAA
ATTTGCTGGTGGTAAACCAATTTTCGCAAAAAAACATTGGAAAGATCATATATTGTTCAA
TGAATATTTCCATGGTGATAGTGGTGCTGGTCTTGGTGCTTCTCACCAGACTGGTTGGAC
TGC
Length of 3' end seq. 603
Connected seq. ID VHF272P
Connected seq.
>VHF272P.Seq
ATTTTNTTTTCATCACAATAATAATGGAACAAAAAAGATTAGATGATTCATTATTAAGAA
ATTCTGATTGGAAGAATTGGGGTACCTATGTAAGTGATAGACAATGGGCAACTGTTCGTG
AAGATTATGGTGGTGAACCATGGACCTACTTTCCACACGATCATGCTAGATCACGTGCAT
ATAGATGGTCAGAGGATAGTATTGGTGGATTTTGTAATAGATTTCAAAATATTTGTTTAG
GTTTAGCATTTTGGAATGAAAAAGATCCAATTATTAAAGAGAGATTTTTTGGACTTGGTG
GACCAGAAGGAAATCATGGTGAAGATGTAAAAGAACATTATTTCTATTTAGATAATACAC
CAACACATTCCTATGCCAAAATGTTATATAAATATCCAATGAATGAATATCCATATAGTG
ATTTAGTATCAACCAATGCACAACGTGGTAAACAAGATCCAGAGTATGAAATTGAAGATA
CTGGTATCTTTGATAAGGATGAATA----------TTCGTAAAGTATAGACNNAATTTAG
TGAAAAACATTGCTCCATTCACTGCTTTGGGTCAAAATAAATCACGTTTACTCTCAATTG
TAAATCGTGAGAAATTGGAATTAATCTTAAAGAAAATGTTGGATGAAGATTGGTTCTTNT
CTGAAAATGGTATTAGATCATTATCAAAACATCACAAGGATCATCCATTCACTTTTGCTG
AGATGGATGCTTGTGTTGGTTATGTACCTGGCGAGAGTGATGTTCATATCATGGGTTCAA
ATAGTAATTGGAGAGGTCCAGTTTGGTTTGCCGTAAATTATCTCATGATTCAATCACTTC
GTACCTATCATGAATACTATGGTGATGAATTCCAAATTGAATATCCAACAAANTCTGGTA
ACNTCGTAACTTTGGATATCGTAGCCGATGATATNTCTAAACGTCTCATTAGTATCTTCC
AAGAGAATCAAGATGGTACTAGAAAATTTGCTGGTGGTAAACCAATTTTCGCAAAAAAAC
ATTGGAAAGATCATATATTGTTCAATGAATATTTCCATGGTGATAGTGGTGCTGGTCTTG
GTGCTTCTCACCAGACTGGTTGGACTGC
Length of connected seq. 1098
Full length Seq ID -
Full length Seq. -
Length of full length seq. -