VHF264
Library VH
(Link to library)
Clone ID VHF264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHF264P
(Link to Original site)
Representative DNA sequence
>VHF264 (VHF264Q) /CSM/VH/VHF2-C/VHF264Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTAAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTXXXX
XXXXXXAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACG
GTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGANT
CTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGA
GAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTG
GTGGTCAAATCATCCCAACTGCTCGTCGTGTANTATATGCTGCTGAATTAACTGCNTCCC
CAAATATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTG
GTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCG
GTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTTCGGTTTCACCG
ATGATTTACGTTCCCACACTGCCGGTCAAGNTTTCCCACAATGTGTCTTCGATCATTGGG
CTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAA
AGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAA
CAATTTAAGTCGCACTTNAGTTTTCAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRKNIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVG---

---WDKNDAMNIWSFGPEGNGANXIVNVTKGVQYLNEIKXSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVXYAAELTASPNILEPIYLVEITAPENAIG
GIXSVLNRRRGIVIGEERRIGSPLLSVKAHLPVLESFGFTDDLRSHTAGQXFPQCVFDHW
ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxfsk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsll---

---ngikmmp*tfglsvqkvtvpxsssmspkvfni*mklkxlslvlsngppkkvlfvmkt
*evsvsifmmspstlmpstevvvkssqllvvxymlln*lxpqis*nqst**kllpqktll
vvfxlysivvevlllvknvvsvphyylskliyqy*nxsvspmiyvptlpvkxshnvssii
glqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshxsfq

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw---

---mg*k*chehlvfrsrr*rcqxhrqchqrcsife*n*rxfrwcfpmghqrrccl**kh
erypfqsl*chpph*chpqrwwsnhpncsscxicc*incxpkylrtnllsrnycprkryw
wylxctqss*rycyw*rtsyrfpiiicqssftsirixrfhr*ftfphcrsxfptmclrsl
gfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtxvfk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRKNIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVG---

---WDKNDAMNIWSFGPEGNGANXIVNVTKGVQYLNEIKXSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVXYAAELTASPNILEPIYLVEITAPENAIG
GIXSVLNRRRGIVIGEERRIGSPLLSVKAHLPVLESFGFTDDLRSHTAGQXFPQCVFDHW
ASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxfsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF264 (VHF264Q) /CSM/VH/VHF2-C/VHF264Q.Seq.d/ 2409 0.0
VHE713 (VHE713Q) /CSM/VH/VHE7-A/VHE713Q.Seq.d/ 1292 0.0
VHF681 (VHF681Q) /CSM/VH/VHF6-D/VHF681Q.Seq.d/ 1291 0.0
VHE885 (VHE885Q) /CSM/VH/VHE8-D/VHE885Q.Seq.d/ 1287 0.0
VHF144 (VHF144Q) /CSM/VH/VHF1-B/VHF144Q.Seq.d/ 1283 0.0
VHF112 (VHF112Q) /CSM/VH/VHF1-A/VHF112Q.Seq.d/ 1283 0.0
VHE779 (VHE779Q) /CSM/VH/VHE7-D/VHE779Q.Seq.d/ 1283 0.0
VHE738 (VHE738Q) /CSM/VH/VHE7-B/VHE738Q.Seq.d/ 1283 0.0
VHF757 (VHF757Q) /CSM/VH/VHF7-C/VHF757Q.Seq.d/ 1281 0.0
VHF758 (VHF758Q) /CSM/VH/VHF7-C/VHF758Q.Seq.d/ 1279 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ439816) Dictyostelium discoideum cDNA clone:ddv41o16, 3' ... 1306 0.0 1
(BJ439334) Dictyostelium discoideum cDNA clone:ddv40j03, 3' ... 1292 0.0 1
(BJ440133) Dictyostelium discoideum cDNA clone:ddv42a22, 3' ... 1291 0.0 1
(BJ439566) Dictyostelium discoideum cDNA clone:ddv40j22, 3' ... 1287 0.0 1
(BJ439704) Dictyostelium discoideum cDNA clone:ddv41g11, 3' ... 1283 0.0 1
(BJ439628) Dictyostelium discoideum cDNA clone:ddv41g03, 3' ... 1283 0.0 1
(BJ439582) Dictyostelium discoideum cDNA clone:ddv40n19, 3' ... 1283 0.0 1
(BJ439422) Dictyostelium discoideum cDNA clone:ddv40l09, 3' ... 1283 0.0 1
(BJ440053) Dictyostelium discoideum cDNA clone:ddv42b15, 3' ... 1281 0.0 1
(BJ440065) Dictyostelium discoideum cDNA clone:ddv42d15, 3' ... 1279 0.0 1
dna update 2008.10.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 411 e-113
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 267 7e-70
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 266 1e-69
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 264 6e-69
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 8e-69
BC077595_1(BC077595|pid:none) Xenopus laevis translation elongat... 263 8e-69
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 263 8e-69
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 263 8e-69
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 263 1e-68
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 263 1e-68
protein update 2009. 7. 2
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHF264 is cyt

5' end seq. ID VHF264F
5' end seq.
>VHF264F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTAAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID VHF264Z
3' end seq.
>VHF264Z.Seq
NNNNNNNNNNAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGT
AACGGTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAA
GANTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAAC
ATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGA
GGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTANTATATGCTGCTGAATTAACTGCN
TCCCCAAATATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATT
GGTGGTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGT
ATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTTCGGTTTC
ACCGATGATTTACGTTCCCACACTGCCGGTCAAGNTTTCCCACAATGTGTCTTCGATCAT
TGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACC
AGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTC
TAAACAATTTAAGTCGCACTTNAGTTTTCAAAG
Length of 3' end seq. 693
Connected seq. ID VHF264P
Connected seq.
>VHF264P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTAAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGT----
------AATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACG
GTGCCAATNTCATCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGANT
CTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGA
GAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTG
GTGGTCAAATCATCCCAACTGCTCGTCGTGTANTATATGCTGCTGAATTAACTGCNTCCC
CAAATATCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTG
GTATTTANTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCG
GTTCCCCATTATTATCTGTCAAAGCTCATTTACCAGTATTAGAATCNTTCGGTTTCACCG
ATGATTTACGTTCCCACACTGCCGGTCAAGNTTTCCCACAATGTGTCTTCGATCATTGGG
CTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAA
AGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAA
CAATTTAAGTCGCACTTNAGTTTTCAAAG
Length of connected seq. 1279
Full length Seq ID -
Full length Seq. -
Length of full length seq. -