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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF263
Library VH
(Link to library)
Clone ID VHF263
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12448-1
Original site URL
Representative seq. ID VHF263P
(Link to Original site)
Representative DNA sequence 
>VHF263 (VHF263Q) /CSM/VH/VHF2-C/VHF263Q.Seq.d/
AAAAATACACAATGATAAATAAAGATACTCCCACTAAATCTCCTCCTTTTAAGTCTGGAT
CAGCTCAAGATGGAAATTTAGATATGAGCGAAACATCAGATATGGTATCAATTGAAAATT
TTGAATTTTTTCTTGATCATGTATATAGTGATGTTTTATCATCTTACTATTTTAAAACAT
TAATCGAACAGGAAAAAATTTTAAAAAAGGAGATTTAAATAAAATAGTTGATGGTGATAA
AGACAATGATAATAAGCAAGCTACAAGAATTATAAATACCCAGGATAAAGATAAAAGAAT
AGATATTATAAAGCAGATTATGAATTCCAAAATTAGAGATTATAAAACAAAAGTTGATAA
TTTTGTTTTGGAAAGTGATAGCTTTTGAAGTTTTTAAAATGAAATATAATTATGTAGAAA
AATTAGAAAAGCCAAACCCAAACGAAGAAACTGCAAAAATAATAAATTCGGGGTTTAACA
AAAGTATTTCAGAATATTTAAGATCAACAATTTCAAAACTAAACGATGACGAGTCATACA
AAAAATGGATATTTCAAXXXXXXXXXXAAATTATTAATAAGGGGGGAAAATGGTACAAAT
ATCAGTTACCAAAACAAATCAAATTATTGTTCGATTACAATAAGCAATGGCTCAATAGGC
NCAGAATATTTAAAAAATGATGAACCATTTCAATTAATTAATTAAAGAATGTGGTAGATT
GAATATTTCTGCTGATGTGGAGGTCAATGGCAAAGGAAAAGAATTTTCAATTAACNCAAT
TGGAAAATCTGGAACACTTTCCTTTAAACNATTTATTAAGTGTTCAGGAAAAAACATTTC
TTTATCTGCTCCAAAACAAGAAAATATTTCCAATTCAAAATTTAAATCNTCAGGCAATTT
GACCNTTGTATCAAATGATAGTGTTAAAGCAATTAATTATCAATCACTTACAATTGAATC
GAAAAAGGGTACCATAATGGCCNCTGTAACAAATAATAGAGAACTTAAAAATTTTATAAA
AATTTATTCTCACAAAACCGACCATATGATCAAGAAAATGAATGAAAAACTTAGGATGGA
AAATTTTCCATTAATGTTACACAAGAGCGAGGTTAGTATATTGCAAAATAAAATTATAGA
ATTAGAATCAAAAATAAGACAGTTGGAAACCGTTCAAGGATCAACAAACCAAAATAAAAA
CAAAATTCCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
kytminkdtptksppfksgsaqdgnldmsetsdmvsienfeffldhvysdvlssyyfktl
ieqekilkkei*ik*lmviktmiisklqel*iprikike*il*srl*IPKLEIIKQKLII
LFWKVIAFEVFKMKYNYVEKLEKPNPNEETAKIINSGFNKSISEYLRSTISKLNDDESYK
KWIFQ---

---KLLIRGENGTNISYQNKSNYCSITISNGSIGXEYLKNDEPFQLIN*rmw*ieyfc*c
ggqwqrkrifn*xnwkiwntfl*tiy*vfrkkhfficsktrkyfqfki*ixrqfdxcik*
*c*sn*lsityn*iekgyhngxcnk**rt*kfyknlfsqnrpydqene*kt*dgkfsinv
tqerg*yiak*nyririknktvgnrsrinkpk*kqns
Translated Amino Acid sequence (All Frames) 
Frame A:
kntq**ikilplnllllsldqlkmei*i*akhqiwyqlkilnfflimyivmfyhltilkh
*snrkkf*krrfk*ns*w**rq***asyknykypg*r*knryykadyefqn*rl*nks**
fcfgk**llkflk*niim*kn*ksqtqtkklqk**irgltkvfqni*dqqfqn*tmtsht
kngyf---

---KLLIRGENGTNISYQNKSNYCSITISNGSIGXEYLKNDEPFQLIN*rmw*ieyfc*c
ggqwqrkrifn*xnwkiwntfl*tiy*vfrkkhfficsktrkyfqfki*ixrqfdxcik*
*c*sn*lsityn*iekgyhngxcnk**rt*kfyknlfsqnrpydqene*kt*dgkfsinv
tqerg*yiak*nyririknktvgnrsrinkpk*kqns

Frame B:
kihndk*rysh*issf*vwissrwkfryernirygin*kf*ifs*sci**cfiillf*ni
nrtgknfkkgdlnkivdgdkdndnkqatriintqdkdkridiikqimnskirdyktkvdn
fvlesdsf*sf*nei*lcrkirkakpkrrncknnkfgv*qkyfrifkinnfktkr*rviq
kmdis---

---ny**ggkmvqisvtktnqiivrlq*amaq*aqni*kmmnhfn*likecgrlnisadv
evngkgkefsinxigksgtlsfkxfikcsgknislsapkqenisnskfkssgnltxvsnd
svkainyqsltieskkgtimaxvtnnrelknfikiyshktdhmikkmneklrmenfplml
hksevsilqnkiieleskirqletvqgstnqnknkip

Frame C:
kytminkdtptksppfksgsaqdgnldmsetsdmvsienfeffldhvysdvlssyyfktl
ieqekilkkei*ik*lmviktmiisklqel*iprikike*il*srl*IPKLEIIKQKLII
LFWKVIAFEVFKMKYNYVEKLEKPNPNEETAKIINSGFNKSISEYLRSTISKLNDDESYK
KWIFQ---

---iinkggkwykyqlpkqikllfdynkqwlnrxrifkk**tisin*lknvvd*ifllmw
rsmakeknfqltqlenlehfplnxllsvqektflyllqnkkifpiqnlnxqai*plyqmi
vlkqliinhlqlnrkrvp*wpl*qiienlkil*kfiltkpti*srk*mknlgwkifh*cy
trarlvyckikl*n*nqk*dswkpfkdqqtkiktkfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF263 (VHF263Q) /CSM/VH/VHF2-C/VHF263Q.Seq.d/                       1893   0.0
VSI747 (VSI747Q) /CSM/VS/VSI7-B/VSI747Q.Seq.d/                         38   0.31
VSH630 (VSH630Q) /CSM/VS/VSH6-B/VSH630Q.Seq.d/                         38   0.31
VSB684 (VSB684Q) /CSM/VS/VSB6-D/VSB684Q.Seq.d/                         38   0.31
VSA451 (VSA451Q) /CSM/VS/VSA4-C/VSA451Q.Seq.d/                         38   0.31
VHH823 (VHH823Q) /CSM/VH/VHH8-A/VHH823Q.Seq.d/                         38   0.31
SSJ571 (SSJ571Q) /CSM/SS/SSJ5-C/SSJ571Q.Seq.d/                         38   0.31
SSB766 (SSB766Q) /CSM/SS/SSB7-C/SSB766Q.Seq.d/                         38   0.31
SSA329 (SSA329Q) /CSM/SS/SSA3-B/SSA329Q.Seq.d/                         38   0.31
SHI859 (SHI859Q) /CSM/SH/SHI8-C/SHI859Q.Seq.d/                         38   0.31
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439805) Dictyostelium discoideum cDNA clone:ddv41m16, 3' ...  1241   0.0    1
(BJ421085) Dictyostelium discoideum cDNA clone:ddv41m16, 5' ...   337   0.0    3
(BX119314) Zebrafish DNA sequence from clone DKEY-18H19 in l...    46   0.001  9
(AL445585) Human DNA sequence from clone RP11-54A3 on chromo...    46   0.007  8
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.009  19
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    42   0.011  14
(DD391852) Method and nucleic acids for the improved treatme...    54   0.013  1
(DD391578) Method and nucleic acids for the improved treatme...    54   0.013  1
(DD238424) Method and nucleic acids for the analysis of colo...    54   0.013  1
(DD238402) Method and nucleic acids for the analysis of colo...    54   0.013  1
dna update 2008.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000123_228(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    43   0.026
CP001083_383(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    38   0.63
CP000021_891(CP000021|pid:none) Vibrio fischeri ES114 chromosome...    38   0.83
A97326(A97326) excinuclease ABC, chain C (uvrC) [imported] - Clo...    37   1.1
FM992691_455(FM992691|pid:none) Candida dubliniensis CD36 chromo...    37   1.4
CP000395_627(CP000395|pid:none) Borrelia afzelii PKo, complete g...    37   1.8
CP000724_1109(CP000724|pid:none) Alkaliphilus metalliredigens QY...    36   3.1
DQ321780_1(DQ321780|pid:none) Trichomonas vaginalis strain NIH-C...    36   3.1
AF486547_1(AF486547|pid:none) Campylobacter jejuni strain RM1167...    35   5.4
CP000728_383(CP000728|pid:none) Clostridium botulinum F str. Lan...    35   5.4
protein update 2009. 7. 2
PSORT 

 psg: 0.87  gvh: 0.41  alm: 0.37  top: 0.60  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for VHF263 is cyt
5' end seq. ID VHF263F
5' end seq. 
>VHF263F.Seq
AAAAATACACAATGATAAATAAAGATACTCCCACTAAATCTCCTCCTTTTAAGTCTGGAT
CAGCTCAAGATGGAAATTTAGATATGAGCGAAACATCAGATATGGTATCAATTGAAAATT
TTGAATTTTTTCTTGATCATGTATATAGTGATGTTTTATCATCTTACTATTTTAAAACAT
TAATCGAACAGGAAAAAATTTTAAAAAAGGAGATTTAAATAAAATAGTTGATGGTGATAA
AGACAATGATAATAAGCAAGCTACAAGAATTATAAATACCCAGGATAAAGATAAAAGAAT
AGATATTATAAAGCAGATTATGAATTCCAAAATTAGAGATTATAAAACAAAAGTTGATAA
TTTTGTTTTGGAAAGTGATAGCTTTTGAAGTTTTTAAAATGAAATATAATTATGTAGAAA
AATTAGAAAAGCCAAACCCAAACGAAGAAACTGCAAAAATAATAAATTCGGGGTTTAACA
AAAGTATTTCAGAATATTTAAGATCAACAATTTCAAAACTAAACGATGACGAGTCATACA
AAAAATGGATATTTCAANNNNNNNNNN
Length of 5' end seq. 567
3' end seq. ID VHF263Z
3' end seq. 
>VHF263Z.Seq
NNNNNNNNNNAAATTATTAATAAGGGGGGAAAATGGTACAAATATCAGTTACCAAAACAA
ATCAAATTATTGTTCGATTACAATAAGCAATGGCTCAATAGGCNCAGAATATTTAAAAAA
TGATGAACCATTTCAATTAATTAATTAAAGAATGTGGTAGATTGAATATTTCTGCTGATG
TGGAGGTCAATGGCAAAGGAAAAGAATTTTCAATTAACNCAATTGGAAAATCTGGAACAC
TTTCCTTTAAACNATTTATTAAGTGTTCAGGAAAAAACATTTCTTTATCTGCTCCAAAAC
AAGAAAATATTTCCAATTCAAAATTTAAATCNTCAGGCAATTTGACCNTTGTATCAAATG
ATAGTGTTAAAGCAATTAATTATCAATCACTTACAATTGAATCGAAAAAGGGTACCATAA
TGGCCNCTGTAACAAATAATAGAGAACTTAAAAATTTTATAAAAATTTATTCTCACAAAA
CCGACCATATGATCAAGAAAATGAATGAAAAACTTAGGATGGAAAATTTTCCATTAATGT
TACACAAGAGCGAGGTTAGTATATTGCAAAATAAAATTATAGAATTAGAATCAAAAATAA
GACAGTTGGAAACCGTTCAAGGATCAACAAACCAAAATAAAAACAAAATTCCTT
Length of 3' end seq. 654
Connected seq. ID VHF263P
Connected seq. 
>VHF263P.Seq
AAAAATACACAATGATAAATAAAGATACTCCCACTAAATCTCCTCCTTTTAAGTCTGGAT
CAGCTCAAGATGGAAATTTAGATATGAGCGAAACATCAGATATGGTATCAATTGAAAATT
TTGAATTTTTTCTTGATCATGTATATAGTGATGTTTTATCATCTTACTATTTTAAAACAT
TAATCGAACAGGAAAAAATTTTAAAAAAGGAGATTTAAATAAAATAGTTGATGGTGATAA
AGACAATGATAATAAGCAAGCTACAAGAATTATAAATACCCAGGATAAAGATAAAAGAAT
AGATATTATAAAGCAGATTATGAATTCCAAAATTAGAGATTATAAAACAAAAGTTGATAA
TTTTGTTTTGGAAAGTGATAGCTTTTGAAGTTTTTAAAATGAAATATAATTATGTAGAAA
AATTAGAAAAGCCAAACCCAAACGAAGAAACTGCAAAAATAATAAATTCGGGGTTTAACA
AAAGTATTTCAGAATATTTAAGATCAACAATTTCAAAACTAAACGATGACGAGTCATACA
AAAAATGGATATTTCAA----------AAATTATTAATAAGGGGGGAAAATGGTACAAAT
ATCAGTTACCAAAACAAATCAAATTATTGTTCGATTACAATAAGCAATGGCTCAATAGGC
NCAGAATATTTAAAAAATGATGAACCATTTCAATTAATTAATTAAAGAATGTGGTAGATT
GAATATTTCTGCTGATGTGGAGGTCAATGGCAAAGGAAAAGAATTTTCAATTAACNCAAT
TGGAAAATCTGGAACACTTTCCTTTAAACNATTTATTAAGTGTTCAGGAAAAAACATTTC
TTTATCTGCTCCAAAACAAGAAAATATTTCCAATTCAAAATTTAAATCNTCAGGCAATTT
GACCNTTGTATCAAATGATAGTGTTAAAGCAATTAATTATCAATCACTTACAATTGAATC
GAAAAAGGGTACCATAATGGCCNCTGTAACAAATAATAGAGAACTTAAAAATTTTATAAA
AATTTATTCTCACAAAACCGACCATATGATCAAGAAAATGAATGAAAAACTTAGGATGGA
AAATTTTCCATTAATGTTACACAAGAGCGAGGTTAGTATATTGCAAAATAAAATTATAGA
ATTAGAATCAAAAATAAGACAGTTGGAAACCGTTCAAGGATCAACAAACCAAAATAAAAA
CAAAATTCCTT
Length of connected seq. 1201
Full length Seq ID -
Full length Seq. -
Length of full length seq. -