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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF261
Library VH
(Link to library)
Clone ID VHF261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16497-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF261 (VHF261Q) /CSM/VH/VHF2-C/VHF261Q.Seq.d/
XXXXXXXXXXACAGTTGAATGCGGTGNTACCAACACTGATAAATGTATCCAATTATCTTG
TAATGAAGCCACCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTNT
AGTTGGTTAATGTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGG
TGTTTTCTGTTTAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTCTATGAAAA
ACGTTGTGATGCTGATAATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCNC
TGAAGAAGGTTATTGTAAATNTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGG
TGCTGTCGTTTCAACTGCTGTCANTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGG
TGTTTTCATNTATGGTGGTAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---vecgxtntdkciqlscneatgcqqsavvcpdvgscxvg*CDSKQGCLTKPRSCDTGV
FCLTGECIENAGGCIVYEKRCDADNGRCQQGVCVNNTAXEEGYCKXEDYDPLPFICKTGA
VVSTAVXAGVTVAGAVALGVFXYGGK
Translated Amino Acid sequence (All Frames) 
Frame A:
---qlnavxptlinvsnylvmkppvannqlsfvqmlvvv*lvnvivnkvvspnqdlailv
fsv*lvnvlkmlvvvssmknvvmlimedvnkvyv*iipplkkvivnxktmihyhsfvklv
lsfqllsxlvslslvllhlvfsxmvvk


Frame B:
---s*mrxyqh**mypiil**shrlptiscrlsrcw*lxswlm***trlshqtkilrywc
flfnw*my*kcwwlyrl*ktl*c**wkmstrcmck*yrx*rrll*x*rl*sitihl*nwc
crfnccxcwchcrwccctwcfhxww*


Frame C:
---vecgxtntdkciqlscneatgcqqsavvcpdvgscxvg*CDSKQGCLTKPRSCDTGV
FCLTGECIENAGGCIVYEKRCDADNGRCQQGVCVNNTAXEEGYCKXEDYDPLPFICKTGA
VVSTAVXAGVTVAGAVALGVFXYGGK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF261 (VHF261Q) /CSM/VH/VHF2-C/VHF261Q.Seq.d/                        823   0.0
VHQ221 (VHQ221Q) /CSM/VH/VHQ2-A/VHQ221Q.Seq.d/                        807   0.0
VHQ163 (VHQ163Q) /CSM/VH/VHQ1-C/VHQ163Q.Seq.d/                        807   0.0
VHP731 (VHP731Q) /CSM/VH/VHP7-B/VHP731Q.Seq.d/                        807   0.0
VHP644 (VHP644Q) /CSM/VH/VHP6-B/VHP644Q.Seq.d/                        807   0.0
VHP362 (VHP362Q) /CSM/VH/VHP3-C/VHP362Q.Seq.d/                        807   0.0
VHO307 (VHO307Q) /CSM/VH/VHO3-A/VHO307Q.Seq.d/                        807   0.0
VHN102 (VHN102Q) /CSM/VH/VHN1-A/VHN102Q.Seq.d/                        807   0.0
VHM523 (VHM523Q) /CSM/VH/VHM5-A/VHM523Q.Seq.d/                        807   0.0
VHM315 (VHM315Q) /CSM/VH/VHM3-A/VHM315Q.Seq.d/                        807   0.0
own update 2004. 8. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439789) Dictyostelium discoideum cDNA clone:ddv41i16, 3' ...   823   0.0    1
(U67940) Dictyostelium discoideum ORFveg106 mRNA, complete cds.   807   0.0    1
(AU034843) Dictyostelium discoideum slug cDNA, clone SLE572.      807   0.0    1
(BJ446731) Dictyostelium discoideum cDNA clone:ddv63m15, 3' ...   807   0.0    1
(BJ446562) Dictyostelium discoideum cDNA clone:ddv63i06, 3' ...   807   0.0    1
(BJ446345) Dictyostelium discoideum cDNA clone:ddv62n07, 3' ...   807   0.0    1
(BJ446311) Dictyostelium discoideum cDNA clone:ddv62g12, 3' ...   807   0.0    1
(BJ446099) Dictyostelium discoideum cDNA clone:ddv61l15, 3' ...   807   0.0    1
(BJ445339) Dictyostelium discoideum cDNA clone:ddv59n01, 3' ...   807   0.0    1
(BJ444639) Dictyostelium discoideum cDNA clone:ddv57c01, 3' ...   807   0.0    1
dna update 2008.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   252   2e-66
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   140   2e-32
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                127   2e-28
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                110   2e-23
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   103   2e-21
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 92   7e-18
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 84   1e-15
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    60   3e-08
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    59   7e-08
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    58   1e-07
protein update 2009. 7. 2
PSORT 

 psg: 0.61  gvh: 0.41  alm: 0.29  top: 0.67  tms: 0.07  mit: 0.21  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.23  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHF261 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF261Z
3' end seq. 
>VHF261Z.Seq
NNNNNNNNNNACAGTTGAATGCGGTGNTACCAACACTGATAAATGTATCCAATTATCTTG
TAATGAAGCCACCGGTTGCCAACAATCAGCTGTCGTTTGTCCAGATGTTGGTAGTTGTNT
AGTTGGTTAATGTGATAGTAAACAAGGTTGTCTCACCAAACCAAGATCTTGCGATACTGG
TGTTTTCTGTTTAACTGGTGAATGTATTGAAAATGCTGGTGGTTGTATCGTCTATGAAAA
ACGTTGTGATGCTGATAATGGAAGATGTCAACAAGGTGTATGTGTAAATAATACCGCCNC
TGAAGAAGGTTATTGTAAATNTGAAGACTATGATCCATTACCATTCATTTGTAAAACTGG
TGCTGTCGTTTCAACTGCTGTCANTGCTGGTGTCACTGTCGCTGGTGCTGTTGCACTTGG
TGTTTTCATNTATGGTGGTAAAA
Length of 3' end seq. 443
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -