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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF236
Library VH
(Link to library)
Clone ID VHF236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14303-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF236 (VHF236Q) /CSM/VH/VHF2-B/VHF236Q.Seq.d/
XXXXXXXXXXTGCCATTGGTAATATGTTGTTGAAATATAAACGTTCTTCACTTCGTAGAG
ATATTAAGTCNCCATGGATTGGCGTATTGANTGCATTGTTTTCCGTTAGTCTTGGTTTAA
TTTCAAATATTATCAAGGATGATTCAATCGTTTACTACTTTGGTATTTACTTTGGTGTTA
CCATTTTCATTATCATGTTAATGTTTANTCGTGCACGTATTCTCAAGTTATTCCTTTTCT
TCACTCAAATCATTCTAAGTGGTGCTGGTCGTGATCGTGNTGCTCGTTGGATTGGTGATG
TCATTAAAAAGATTAACTCTCAACCAGTTGTNTTNTTTGNTTCAAAGGATGATCCAGCCT
ATTTGAATAAAGCCATCCTTTACATTCGTGATAATGAACAAACCAATTGGGTTAGAGTCG
TACATTGTTGTAATGAAGAAGAATCAACCGATTCTTTNTCTTCAACTATGGAATTCTTAG
ATAAATGTTATCCAAAGANTAGANTAGATATCATTCGTGTCAACGCTGAATTCAATGCTT
CCACTGTTCAAAAGATCTCTCAAGAATTAAAGCACCTGACTTAAACTTTTGTTTCGTATC
TTGTATTAAAG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---AIGNMLLKYKRSSLRRDIKSPWIGVLXALFSVSLGLISNIIKDDSIVYYFGIYFGVT
IFIIMLMFXRARILKLFLFFTQIILSGAGRDRXARWIGDVIKKINSQPVVXFXSKDDPAY
LNKAILYIRDNEQTNWVRVVHCCNEEESTDSXSSTMEFLDKCYPKXRXDIIRVNAEFNAS
TVQKISQELKHLT*tfvsylvlk
Translated Amino Acid sequence (All Frames) 
Frame A:
---AIGNMLLKYKRSSLRRDIKSPWIGVLXALFSVSLGLISNIIKDDSIVYYFGIYFGVT
IFIIMLMFXRARILKLFLFFTQIILSGAGRDRXARWIGDVIKKINSQPVVXFXSKDDPAY
LNKAILYIRDNEQTNWVRVVHCCNEEESTDSXSSTMEFLDKCYPKXRXDIIRVNAEFNAS
TVQKISQELKHLT*tfvsylvlk


Frame B:
---plvicc*ninvlhfveilsxhglay*xhcfplvlv*fqilsrmiqsfttlvftlvlp
fslsc*clxvhvfssysfsslksf*vvlvvivxlvglvmslkrltlnqlxxlxqrmiqpi
*ikpsftfvimnkpiglesyivvmkknqpilxlqlwns*inviqrxx*isfvstlnsmlp
lfkrslkn*st*lkllfrily*


Frame C:
---hw*yvvei*tffts*ry*vxmdwrixcivfr*swfnfkyyqg*fnrlllwyllwcyh
fhyhvnvxsctysqvipflhsnhskwcws*sxcsldw*ch*kd*lstscxxxfkg*sslf
e*shplhs***tnqlg*srtll**rrinrffxfnygilr*mlskx*xryhscqr*iqcfh
cskdlsrikapdlnfcfvscik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF236 (VHF236Q) /CSM/VH/VHF2-B/VHF236Q.Seq.d/                       1132   0.0
VHJ872 (VHJ872Q) /CSM/VH/VHJ8-C/VHJ872Q.Seq.d/                       1076   0.0
CHI770 (CHI770Q) /CSM/CH/CHI7-C/CHI770Q.Seq.d/                       1072   0.0
VHK267 (VHK267Q) /CSM/VH/VHK2-C/VHK267Q.Seq.d/                       1070   0.0
VHI612 (VHI612Q) /CSM/VH/VHI6-A/VHI612Q.Seq.d/                       1070   0.0
VFI245 (VFI245Q) /CSM/VF/VFI2-B/VFI245Q.Seq.d/                       1070   0.0
SHA452 (SHA452Q) /CSM/SH/SHA4-C/SHA452Q.Seq.d/                       1070   0.0
CHR455 (CHR455Q) /CSM/CH/CHR4-C/CHR455Q.Seq.d/                       1070   0.0
CHG858 (CHG858Q) /CSM/CH/CHG8-C/CHG858Q.Seq.d/                       1070   0.0
CHM162 (CHM162Q) /CSM/CH/CHM1-C/CHM162Q.Seq.d/                       1066   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439703) Dictyostelium discoideum cDNA clone:ddv41g10, 3' ...  1132   0.0    1
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423...  1031   0.0    2
(BJ442987) Dictyostelium discoideum cDNA clone:ddv51e18, 3' ...  1031   0.0    2
(BJ442702) Dictyostelium discoideum cDNA clone:ddv50p18, 3' ...  1031   0.0    2
(BJ441854) Dictyostelium discoideum cDNA clone:ddv48g04, 3' ...  1031   0.0    2
(BJ432022) Dictyostelium discoideum cDNA clone:ddv17i12, 3' ...  1031   0.0    2
(BJ403269) Dictyostelium discoideum cDNA clone:dds24h14, 3' ...  1031   0.0    2
(BJ385952) Dictyostelium discoideum cDNA clone:ddc56n14, 3' ...  1031   0.0    2
(BJ380890) Dictyostelium discoideum cDNA clone:ddc39l17, 3' ...  1031   0.0    2
(BJ379647) Dictyostelium discoideum cDNA clone:ddc35d16, 3' ...  1031   0.0    2
dna update 2008.10.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116925_7(AC116925|pid:none) Dictyostelium discoideum chromosom...   323   2e-89
CT025834_28(CT025834|pid:none) uncultured sulfate-reducing bacte...    84   3e-15
CP000685_2780(CP000685|pid:none) Flavobacterium johnsoniae UW101...    73   7e-12
CR522870_2116(CR522870|pid:none) Desulfotalea psychrophila LSv54...    69   8e-11
CP001041_6(CP001041|pid:none) Nostoc punctiforme PCC 73102 plasm...    34   2.9
AF538053_9(AF538053|pid:none) Monosiga brevicollis mitochondrion...    34   3.7
CP001581_1292(CP001581|pid:none) Clostridium botulinum A2 str. K...    33   6.4
AE009441_109(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,...    33   6.4
EU016195_9(EU016195|pid:none) Orchesella villosa mitochondrion, ...    33   6.4
protein update 2009. 7. 2
PSORT 

 psg: 0.39  gvh: 0.71  alm: 0.26  top: 0.13  tms: 0.20  mit: 0.44  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	 12.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for VHF236 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHF236Z
3' end seq. 
>VHF236Z.Seq
NNNNNNNNNNTGCCATTGGTAATATGTTGTTGAAATATAAACGTTCTTCACTTCGTAGAG
ATATTAAGTCNCCATGGATTGGCGTATTGANTGCATTGTTTTCCGTTAGTCTTGGTTTAA
TTTCAAATATTATCAAGGATGATTCAATCGTTTACTACTTTGGTATTTACTTTGGTGTTA
CCATTTTCATTATCATGTTAATGTTTANTCGTGCACGTATTCTCAAGTTATTCCTTTTCT
TCACTCAAATCATTCTAAGTGGTGCTGGTCGTGATCGTGNTGCTCGTTGGATTGGTGATG
TCATTAAAAAGATTAACTCTCAACCAGTTGTNTTNTTTGNTTCAAAGGATGATCCAGCCT
ATTTGAATAAAGCCATCCTTTACATTCGTGATAATGAACAAACCAATTGGGTTAGAGTCG
TACATTGTTGTAATGAAGAAGAATCAACCGATTCTTTNTCTTCAACTATGGAATTCTTAG
ATAAATGTTATCCAAAGANTAGANTAGATATCATTCGTGTCAACGCTGAATTCAATGCTT
CCACTGTTCAAAAGATCTCTCAAGAATTAAAGCACCTGACTTAAACTTTTGTTTCGTATC
TTGTATTAAAG
Length of 3' end seq. 611
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -