>VHF229 (VHF229Q) /CSM/VH/VHF2-B/VHF229Q.Seq.d/
XXXXXXXXXXGNTGCTGCTGNTTTAATCANTGGTGGAGTNGTAGATGCANNATATGATGA
TGATGATGATGANGAAGNGGAGGANNNTTTAGATGNTGANAGTGATGATGATNNTCANGG
TNGTNGNAGTAGTANTGCTAGTGCTAATNCNAGTGATTATGATAATGATGATGATGANGA
TGATGATGATGA

---AAXLIXGGVVDAXYDDDDDXEXEXXLDXXSDDDXXGXXSSXASANXSDYDNDDDXDD
DD

Frame A:
---xllx*sxvex*mxxmmmmmmxkxrxx*mxxvmmxxxvvxvvxlvlxxvimimmmmxm
mmm


Frame B:
---ccxfnxwwsxrcxi******xxggxfrx*x***xsxxxx*xc*c*xx*l******x*
***


Frame C:
---AAXLIXGGVVDAXYDDDDDXEXEXXLDXXSDDDXXGXXSSXASANXSDYDNDDDXDD
DD

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF229 (VHF229Q) /CSM/VH/VHF2-B/VHF229Q.Seq.d/                         68   5e-11
SSM771 (SSM771Q) /CSM/SS/SSM7-C/SSM771Q.Seq.d/                         32   2.8
SLJ648 (SLJ648Q) /CSM/SL/SLJ6-B/SLJ648Q.Seq.d/                         32   2.8
SLC128 (SLC128Q) /CSM/SL/SLC1-B/SLC128Q.Seq.d/                         32   2.8
SLB415 (SLB415Q) /CSM/SL/SLB4-A/SLB415Q.Seq.d/                         32   2.8
SLB292 (SLB292Q) /CSM/SL/SLB2-D/SLB292Q.Seq.d/                         32   2.8
CHD613 (CHD613Q) /CSM/CH/CHD6-A/CHD613Q.Seq.d/                         32   2.8

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ439713) Dictyostelium discoideum cDNA clone:ddv41i08, 3' ...    54   7e-09  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001001_4633(CP001001|pid:none) Methylobacterium radiotolerans ...    37   0.22
BC130064_1(BC130064|pid:none) Xenopus laevis similar to fetuin B...    37   0.28
BC159140_1(BC159140|pid:none) Xenopus tropicalis nemo-like kinas...    37   0.28
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    36   0.37
Y08266_1(Y08266|pid:none) H.sapiens mRNA for DAN15 protein, part...    36   0.37
(Q8NFD5) RecName: Full=AT-rich interactive domain-containing pro...    36   0.37
AF521671_1(AF521671|pid:none) Homo sapiens SWI/SNF chromatin rem...    36   0.37
AB188114_1(AB188114|pid:none) Danio rerio brn3a mRNA for brain-s...    29   0.42
BC056326_1(BC056326|pid:none) Danio rerio POU domain, class 4, t...    29   0.42
AF196575_1(AF196575|pid:none) Xenopus laevis class IV POU-homeod...    29   0.42

 psg: 0.75  gvh: 0.49  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHF229 is nuc

>VHF229Z.Seq
NNNNNNNNNNGNTGCTGCTGNTTTAATCANTGGTGGAGTNGTAGATGCANNATATGATGA
TGATGATGATGANGAAGNGGAGGANNNTTTAGATGNTGANAGTGATGATGATNNTCANGG
TNGTNGNAGTAGTANTGCTAGTGCTAATNCNAGTGATTATGATAATGATGATGATGANGA
TGATGATGATGA