VHF210
Library VH
(Link to library)
Clone ID VHF210
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12400-1|Contig-U16431-1
Original site URL
Representative seq. ID VHF210P
(Link to Original site)
Representative DNA sequence
>VHF210 (VHF210Q) /CSM/VH/VHF2-A/VHF210Q.Seq.d/
AATAAAATGATAAGATCATCAATAAAAAATAAAATAACAACAACAAAAAGTTTATCATGT
ATTTCATTAATAAATAGACAATATGGTACATCAACAAAAGAAGTACGTGAAACATTTTTA
AATTATTTTGAAAAAAATGGTCATAAAAGATTACCAAGTGGTAGTTTATTACCATATAAT
GATAATTCATTATTATTTACAAATGCAGGTATGGTACAATTTAAAAATCAATTTACAGGT
AATGAAGAATCAAAATATAAAAAAGTTACAACATCACAAAAATGTGTTAGAGCAGGTGGT
AAACATAATGATTTAGATAATGTTGGATATACAGCAAGACATCATACATTTTTTGAAATG
TTGGGTAATTTTTCATTTGGAGGATATAATCATTTTAAAAGAGATTCAATTCAACATGCA
TGGGATTTATTGACAAAAGAATATGGTTTACCAAAAGAGAGATTAGCAATTTCAGTTTTA
GAGGGTGATGAAGAATCAGCAGAAATTTGGAGAAATCAAATTGGATTACCAAATGATAAG
ATTATGTATAAAGGTAGAGAGGATAATTTTTGGTCAATGGGTGGATGGTCCTGGACCATG
TGGXXXXXXXXXXAGCTCTGTGGTGGTACACATGTTGAACGTTCATCTTCAATTCATCAA
TTTAAAATTATAAGTGAAAGTAGTGTAGCAGCAGGAACTCGTAGAATTGAAGCAGTGGCA
GGTTTAGCAGCAACAAACTTTTTCAAAAATCATTATCAATTAGTTCATCAATTATCAAAT
AGTATAAATTCGCCAATAGTTAATTTCCAACAATCATTTGAACGTTTGGTAAATACAAAT
TCAAAACAAGAAAAAGAAATTTTCGATCTAAAATTAAAGATTGCTCAACTTTCATCTGTA
AATTATAATGGTCAATACAAATCTGATAATGGTGGTGAAATGATACCTTTATCATTACAT
ATTATCGATTGTGAAGATAAAAAAGCATTTACAAAAGTAACTGAAAACTTTGCAAAAGAA
TTNTCTTCATCACCAATTCAATTAACAATTAGTAAAGGTGGAAAAGTTTTATGTCAATTA
TTATCATCATCATCATCNTCATCNTCNTCATTATCAGCTGAGACAGTTTTAAAGACAATT
ATTTAAATCAATTGGTATGGGAAAAGGTGGTGGAAATAAATTAAGGGCAAANGCTTCAAT
TCAACCATTAAATAATGAAATTTTAAATTCAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
NKMIRSSIKNKITTTKSLSCISLINRQYGTSTKEVRETFLNYFEKNGHKRLPSGSLLPYN
DNSLLFTNAGMVQFKNQFTGNEESKYKKVTTSQKCVRAGGKHNDLDNVGYTARHHTFFEM
LGNFSFGGYNHFKRDSIQHAWDLLTKEYGLPKERLAISVLEGDEESAEIWRNQIGLPNDK
IMYKGREDNFWSMGGWSWTMW---

---LCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNHYQLVHQLSNSI
NSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIAQLSSVNYNGQYKSDNGGEMIPLSLHII
DCEDKKAFTKVTENFAKEXSSSPIQLTISKGGKVLCQLLSSSSSSSSSLSAETVLKTII*
inwygkrwwk*ikgkxfnstik**nfkfnfk


Translated Amino Acid sequence (All Frames)
Frame A:
NKMIRSSIKNKITTTKSLSCISLINRQYGTSTKEVRETFLNYFEKNGHKRLPSGSLLPYN
DNSLLFTNAGMVQFKNQFTGNEESKYKKVTTSQKCVRAGGKHNDLDNVGYTARHHTFFEM
LGNFSFGGYNHFKRDSIQHAWDLLTKEYGLPKERLAISVLEGDEESAEIWRNQIGLPNDK
IMYKGREDNFWSMGGWSWTMW---

---ssvvvhmlnvhlqfinlkl*vkvv*qqelvelkqwqv*qqqtfskiiin*finyqiv
*irq*lisnnhlnvw*iqiqnkkkkfsi*n*rllnfhl*iimvntnlimvvk*ylyhyil
sivkikkhlqk*lktlqknxlhhqfn*qlvkvekfyvnyyhhhhxhxxhyqlrqf*rqlf
ksigmgkgggnklraxasiqplnneilnsil

Frame B:
ik**dhq*kik*qqqkvyhvfh**idnmvhqqkkyvkhf*iilkkmvikdyqvvvyyhim
iihyylqmqvwynlkinlqvmknqnikklqhhknvleqvvnimi*imldiqqdiihflkc
wvifhlediiilkeiqfnmhgiy*qknmvyqkrd*qfqf*rvmknqqkfgeikldyqmir
lcikveriifgqwvdgpgpc---

---alwwytc*tfifnssi*nyk*k*cssrns*n*ssgrfssnklfqkslsisssiik*y
kfans*fptii*tfgkykfktrkrnfrskikdcstfickl*wsiqi**ww*ndtfiityy
rl*r*ksiyksn*klckrixfitnsinn**rwksfmsiiiiiiixixxiis*dsfkdnyl
nqlvwekvvein*gqxlqfnh*imkf*iqf*

Frame C:
*ndkiinkk*nnnnkkfimyfink*tiwyinkrst*nifklf*kkws*kitkw*fiti**
*fiiiykcrygti*ksiyr**riki*ksynitkmc*srw*t**fr*cwiysktsyif*nv
g*ffiwri*sf*krfnstcmgfidkriwftkreisnfsfrg**risrnleksnwitk**d
yv*r*rg*flvngwmvldhv---

---LCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNHYQLVHQLSNSI
NSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIAQLSSVNYNGQYKSDNGGEMIPLSLHII
DCEDKKAFTKVTENFAKEXSSSPIQLTISKGGKVLCQLLSSSSSSSSSLSAETVLKTII*
inwygkrwwk*ikgkxfnstik**nfkfnfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF210 (VHF210Q) /CSM/VH/VHF2-A/VHF210Q.Seq.d/ 1939 0.0
VHP273 (VHP273Q) /CSM/VH/VHP2-D/VHP273Q.Seq.d/ 1041 0.0
VHG721 (VHG721Q) /CSM/VH/VHG7-A/VHG721Q.Seq.d/ 1041 0.0
SHK547 (SHK547Q) /CSM/SH/SHK5-B/SHK547Q.Seq.d/ 1041 0.0
AHO389 (AHO389Q) /CSM/AH/AHO3-D/AHO389Q.Seq.d/ 1041 0.0
VHD120 (VHD120Q) /CSM/VH/VHD1-A/VHD120Q.Seq.d/ 1029 0.0
VHB514 (VHB514Q) /CSM/VH/VHB5-A/VHB514Q.Seq.d/ 1021 0.0
VHL882 (VHL882Q) /CSM/VH/VHL8-D/VHL882Q.Seq.d/ 946 0.0
AHO189 (AHO189Q) /CSM/AH/AHO1-D/AHO189Q.Seq.d/ 922 0.0
CHQ319 (CHQ319Q) /CSM/CH/CHQ3-A/CHQ319Q.Seq.d/ 918 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 924 0.0 7
(BJ439609) Dictyostelium discoideum cDNA clone:ddv41c04, 3' ... 924 0.0 2
(BJ408317) Dictyostelium discoideum cDNA clone:dds45m11, 3' ... 924 0.0 3
(BJ356249) Dictyostelium discoideum cDNA clone:dda59a23, 3' ... 924 0.0 3
(BJ421195) Dictyostelium discoideum cDNA clone:ddv41c04, 5' ... 920 0.0 2
(BJ385168) Dictyostelium discoideum cDNA clone:ddc54f05, 3' ... 920 0.0 3
(BJ446123) Dictyostelium discoideum cDNA clone:ddv61a20, 3' ... 912 0.0 4
(BJ437396) Dictyostelium discoideum cDNA clone:ddv34k03, 3' ... 892 0.0 3
(BJ427228) Dictyostelium discoideum cDNA clone:ddv61a20, 5' ... 884 0.0 3
(BJ421875) Dictyostelium discoideum cDNA clone:ddv44j05, 5' ... 884 0.0 3
dna update 2008.10.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115598_31(AC115598|pid:none) Dictyostelium discoideum chromoso... 389 e-106
CP001196_1415(CP001196|pid:none) Oligotropha carboxidovorans OM5... 214 7e-54
(A9IVY8) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 213 1e-53
(A6X0E9) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 212 2e-53
(A5VQX4) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 212 3e-53
(Q2G8V0) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 211 3e-53
CP000394_1369(CP000394|pid:none) Granulibacter bethesdensis CGDN... 211 6e-53
CP000613_878(CP000613|pid:none) Rhodospirillum centenum SW, comp... 210 7e-53
(Q2RQI0) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 210 7e-53
(A8LL20) RecName: Full=Alanyl-tRNA synthetase; EC=6.1.1... 209 1e-52
protein update 2009. 7. 2
PSORT

psg: 0.77 gvh: 0.33 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.54 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
12.0 %: cytoplasmic
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for VHF210 is mit

5' end seq. ID VHF210F
5' end seq.
>VHF210F.Seq
AATAAAATGATAAGATCATCAATAAAAAATAAAATAACAACAACAAAAAGTTTATCATGT
ATTTCATTAATAAATAGACAATATGGTACATCAACAAAAGAAGTACGTGAAACATTTTTA
AATTATTTTGAAAAAAATGGTCATAAAAGATTACCAAGTGGTAGTTTATTACCATATAAT
GATAATTCATTATTATTTACAAATGCAGGTATGGTACAATTTAAAAATCAATTTACAGGT
AATGAAGAATCAAAATATAAAAAAGTTACAACATCACAAAAATGTGTTAGAGCAGGTGGT
AAACATAATGATTTAGATAATGTTGGATATACAGCAAGACATCATACATTTTTTGAAATG
TTGGGTAATTTTTCATTTGGAGGATATAATCATTTTAAAAGAGATTCAATTCAACATGCA
TGGGATTTATTGACAAAAGAATATGGTTTACCAAAAGAGAGATTAGCAATTTCAGTTTTA
GAGGGTGATGAAGAATCAGCAGAAATTTGGAGAAATCAAATTGGATTACCAAATGATAAG
ATTATGTATAAAGGTAGAGAGGATAATTTTTGGTCAATGGGTGGATGGTCCTGGACCATG
TGGNNNNNNNNNN
Length of 5' end seq. 613
3' end seq. ID VHF210Z
3' end seq.
>VHF210Z.Seq
NNNNNNNNNNAGCTCTGTGGTGGTACACATGTTGAACGTTCATCTTCAATTCATCAATTT
AAAATTATAAGTGAAAGTAGTGTAGCAGCAGGAACTCGTAGAATTGAAGCAGTGGCAGGT
TTAGCAGCAACAAACTTTTTCAAAAATCATTATCAATTAGTTCATCAATTATCAAATAGT
ATAAATTCGCCAATAGTTAATTTCCAACAATCATTTGAACGTTTGGTAAATACAAATTCA
AAACAAGAAAAAGAAATTTTCGATCTAAAATTAAAGATTGCTCAACTTTCATCTGTAAAT
TATAATGGTCAATACAAATCTGATAATGGTGGTGAAATGATACCTTTATCATTACATATT
ATCGATTGTGAAGATAAAAAAGCATTTACAAAAGTAACTGAAAACTTTGCAAAAGAATTN
TCTTCATCACCAATTCAATTAACAATTAGTAAAGGTGGAAAAGTTTTATGTCAATTATTA
TCATCATCATCATCNTCATCNTCNTCATTATCAGCTGAGACAGTTTTAAAGACAATTATT
TAAATCAATTGGTATGGGAAAAGGTGGTGGAAATAAATTAAGGGCAAANGCTTCAATTCA
ACCATTAAATAATGAAATTTTAAATTCAATTTTAAA
Length of 3' end seq. 636
Connected seq. ID VHF210P
Connected seq.
>VHF210P.Seq
AATAAAATGATAAGATCATCAATAAAAAATAAAATAACAACAACAAAAAGTTTATCATGT
ATTTCATTAATAAATAGACAATATGGTACATCAACAAAAGAAGTACGTGAAACATTTTTA
AATTATTTTGAAAAAAATGGTCATAAAAGATTACCAAGTGGTAGTTTATTACCATATAAT
GATAATTCATTATTATTTACAAATGCAGGTATGGTACAATTTAAAAATCAATTTACAGGT
AATGAAGAATCAAAATATAAAAAAGTTACAACATCACAAAAATGTGTTAGAGCAGGTGGT
AAACATAATGATTTAGATAATGTTGGATATACAGCAAGACATCATACATTTTTTGAAATG
TTGGGTAATTTTTCATTTGGAGGATATAATCATTTTAAAAGAGATTCAATTCAACATGCA
TGGGATTTATTGACAAAAGAATATGGTTTACCAAAAGAGAGATTAGCAATTTCAGTTTTA
GAGGGTGATGAAGAATCAGCAGAAATTTGGAGAAATCAAATTGGATTACCAAATGATAAG
ATTATGTATAAAGGTAGAGAGGATAATTTTTGGTCAATGGGTGGATGGTCCTGGACCATG
TGG----------AGCTCTGTGGTGGTACACATGTTGAACGTTCATCTTCAATTCATCAA
TTTAAAATTATAAGTGAAAGTAGTGTAGCAGCAGGAACTCGTAGAATTGAAGCAGTGGCA
GGTTTAGCAGCAACAAACTTTTTCAAAAATCATTATCAATTAGTTCATCAATTATCAAAT
AGTATAAATTCGCCAATAGTTAATTTCCAACAATCATTTGAACGTTTGGTAAATACAAAT
TCAAAACAAGAAAAAGAAATTTTCGATCTAAAATTAAAGATTGCTCAACTTTCATCTGTA
AATTATAATGGTCAATACAAATCTGATAATGGTGGTGAAATGATACCTTTATCATTACAT
ATTATCGATTGTGAAGATAAAAAAGCATTTACAAAAGTAACTGAAAACTTTGCAAAAGAA
TTNTCTTCATCACCAATTCAATTAACAATTAGTAAAGGTGGAAAAGTTTTATGTCAATTA
TTATCATCATCATCATCNTCATCNTCNTCATTATCAGCTGAGACAGTTTTAAAGACAATT
ATTTAAATCAATTGGTATGGGAAAAGGTGGTGGAAATAAATTAAGGGCAAANGCTTCAAT
TCAACCATTAAATAATGAAATTTTAAATTCAATTTTAAA
Length of connected seq. 1229
Full length Seq ID -
Full length Seq. -
Length of full length seq. -