NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF202
Library VH
(Link to library)
Clone ID VHF202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15304-1
Original site URL
Representative seq. ID VHF202P
(Link to Original site)
Representative DNA sequence 
>VHF202 (VHF202Q) /CSM/VH/VHF2-A/VHF202Q.Seq.d/
TTAAATAATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGT
GGATTAAAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCA
TGGGATACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATCCAATT
NCAAGGTTTTCCTTTTTTATGGTNCAACCTGGGTACAAGTGGTAAAATTAAAATTCCXXX
XXXXXXXCTGATTTTATCTCACTTTTAGTTGTAACTCNTGGTCATCNTGAAAGTGGTCCT
TTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAATATCAATGGGAATCAAGTTCA
ACTGCTAAATCAAAATTATTTATTCAATTATTATTACTTTGTTCTTCTTGGGCACAAACT
TCATTACCATATCATATTGAAAAAGTTGAATCAAATGATCAATTATTTACAGAAGATCCA
GAGTTTAATACAGAATTAACAGAATTTTATAATTCATTAATTAAAGAAATTTTATATGAT
TTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAGAAAAAAGTTGGTATCATTTGT
ATTGATTTAATAAATGCATTATTAAATGTTGGTGAATTAAATAGTAAGACAGCATCATTA
ATTTTCAATTTATATAATAGGGCAAAGAAAATTATACCATCAACNTGTTTCAGATGAAAT
TACATATTTAAAGAATACTCTTGCTTTTATTGGAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
*iih*kknmihfqkqlqqwvd*n**kkii*qimlmrilchgih*NHRFFNNIPLMIQIQX
QGFPFLWXNLGTSGKIKI---

---DFISLLVVTXGHXESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQLLLLCSSWAQT
SLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDNLTQKKVGIIC
IDLINALLNVGELNSKTASLIFNLYNRAKKIIPSTCFR*nyifkeyscfywn
Translated Amino Acid sequence (All Frames) 
Frame A:
lnnplekkhdplsetiatmgglklikenhltnyvdenfmpwdtlkpsilqqytsddsnpi
xrfsffmvqpgykw*n*ns---

---lilshf*l*lxvixkvvlsi**rlfikslkningnqvqllnqnylfnyyyfvllghk
lhyhiilkklnqminylqkiqsliqn*qnfiih*lkkfymi*if*kmnqii*hrkklvsf
vli**mhy*mlvn*ivrqhh*fsiyiigqrklyhqxvsdeitylkntlafig

Frame B:
*iih*kknmihfqkqlqqwvd*n**kkii*qimlmrilchgih*NHRFFNNIPLMIQIQX
QGFPFLWXNLGTSGKIKI---

---*fyltfscnswss*kwsflfskgsl*sh*rismgikfnc*ikiiysiiitlfflgtn
fitisy*ks*ik*siiyrrsrv*yrinril*fin*rnfi*fksfer*tr*fntekswyhl
y*fnkciikcw*ik**dsiinfqfi**gkenytinxfqmklhi*rillllle

Frame C:
k*sirkkt*stfrnncnngwikinkrksfnklc**efyamgyietidsstiyl**fksnx
kvflfygxtwvqvvklkf---

---DFISLLVVTXGHXESGPFYLVKALYKVIKEYQWESSSTAKSKLFIQLLLLCSSWAQT
SLPYHIEKVESNDQLFTEDPEFNTELTEFYNSLIKEILYDLNLLKDEPDNLTQKKVGIIC
IDLINALLNVGELNSKTASLIFNLYNRAKKIIPSTCFR*nyifkeyscfywn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF202 (VHF202Q) /CSM/VH/VHF2-A/VHF202Q.Seq.d/                       1362   0.0
VHL804 (VHL804Q) /CSM/VH/VHL8-A/VHL804Q.Seq.d/                        975   0.0
VHF713 (VHF713Q) /CSM/VH/VHF7-A/VHF713Q.Seq.d/                        975   0.0
VHE715 (VHE715Q) /CSM/VH/VHE7-A/VHE715Q.Seq.d/                        975   0.0
VHQ429 (VHQ429Q) /CSM/VH/VHQ4-B/VHQ429Q.Seq.d/                        967   0.0
VHQ390 (VHQ390Q) /CSM/VH/VHQ3-D/VHQ390Q.Seq.d/                        967   0.0
VHP836 (VHP836Q) /CSM/VH/VHP8-B/VHP836Q.Seq.d/                        967   0.0
VHO624 (VHO624Q) /CSM/VH/VHO6-A/VHO624Q.Seq.d/                        967   0.0
VHO612 (VHO612Q) /CSM/VH/VHO6-A/VHO612Q.Seq.d/                        967   0.0
VHO173 (VHO173Q) /CSM/VH/VHO1-D/VHO173Q.Seq.d/                        967   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...   325   0.0    7
(BJ439607) Dictyostelium discoideum cDNA clone:ddv41c02, 3' ...   991   0.0    1
(BJ443775) Dictyostelium discoideum cDNA clone:ddv54h02, 3' ...   904   0.0    2
(BJ439936) Dictyostelium discoideum cDNA clone:ddv42j03, 3' ...   904   0.0    2
(BJ439351) Dictyostelium discoideum cDNA clone:ddv40n03, 3' ...   904   0.0    2
(BJ439809) Dictyostelium discoideum cDNA clone:ddv41n14, 3' ...   898   0.0    2
(BJ445619) Dictyostelium discoideum cDNA clone:ddv60g04, 3' ...   896   0.0    2
(BJ437270) Dictyostelium discoideum cDNA clone:ddv33a21, 3' ...   896   0.0    2
(BJ437093) Dictyostelium discoideum cDNA clone:ddv33m05, 3' ...   896   0.0    2
(BJ407218) Dictyostelium discoideum cDNA clone:dds37i19, 3' ...   896   0.0    2
dna update 2008.10.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007154_1(BC007154|pid:none) Mus musculus RIKEN cDNA 9030624J02...    87   7e-16
BC043674_1(BC043674|pid:none) Mus musculus RIKEN cDNA 9030624J02...    87   7e-16
AK050302_1(AK050302|pid:none) Mus musculus adult male liver tumo...    85   3e-15
(Q9H0L7) RecName: Full=UPF0505 protein C16orf62; AltName: Full=E...    83   1e-14
AL136744_1(AL136744|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0...    83   1e-14
(Q5R8N4) RecName: Full=UPF0505 protein C16orf62 homolog;  &CR859...    83   1e-14
AK024693_1(AK024693|pid:none) Homo sapiens cDNA: FLJ21040 fis, c...    83   1e-14
AF461052_1(AF461052|pid:none) Homo sapiens esophageal cancer ass...    83   1e-14
AC002550_3(AC002550|pid:none) Human Chromosome 16 BAC clone CIT9...    83   1e-14
AK095078_1(AK095078|pid:none) Homo sapiens cDNA FLJ37759 fis, cl...    83   1e-14
protein update 2009. 7. 2
PSORT 

 psg: 0.86  gvh: 0.57  alm: 0.35  top: 0.43  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VHF202 is nuc
5' end seq. ID VHF202F
5' end seq. 
>VHF202F.Seq
TTAAATAATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGT
GGATTAAAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCA
TGGGATACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATCCAATT
NCAAGGTTTTCCTTTTTTATGGTNCAACCTGGGTACAAGTGGTAAAATTAAAATTCCNNN
NNNNNNN
Length of 5' end seq. 247
3' end seq. ID VHF202Z
3' end seq. 
>VHF202Z.Seq
NNNNNNNNNNCTGATTTTATCTCACTTTTAGTTGTAACTCNTGGTCATCNTGAAAGTGGT
CCTTTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAATATCAATGGGAATCAAGT
TCAACTGCTAAATCAAAATTATTTATTCAATTATTATTACTTTGTTCTTCTTGGGCACAA
ACTTCATTACCATATCATATTGAAAAAGTTGAATCAAATGATCAATTATTTACAGAAGAT
CCAGAGTTTAATACAGAATTAACAGAATTTTATAATTCATTAATTAAAGAAATTTTATAT
GATTTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAGAAAAAAGTTGGTATCATT
TGTATTGATTTAATAAATGCATTATTAAATGTTGGTGAATTAAATAGTAAGACAGCATCA
TTAATTTTCAATTTATATAATAGGGCAAAGAAAATTATACCATCAACNTGTTTCAGATGA
AATTACATATTTAAAGAATACTCTTGCTTTTATTGGAAC
Length of 3' end seq. 519
Connected seq. ID VHF202P
Connected seq. 
>VHF202P.Seq
TTAAATAATCCATTAGAAAAAAAACATGATCCACTTTCAGAAACAATTGCAACAATGGGT
GGATTAAAATTAATAAAAGAAAATCATTTAACAAATTATGTTGATGAGAATTTTATGCCA
TGGGATACATTGAAACCATCGATTCTTCAACAATATACCTCTGATGATTCAAATCCAATT
NCAAGGTTTTCCTTTTTTATGGTNCAACCTGGGTACAAGTGGTAAAATTAAAATTCC---
-------CTGATTTTATCTCACTTTTAGTTGTAACTCNTGGTCATCNTGAAAGTGGTCCT
TTCTATTTAGTAAAGGCTCTTTATAAAGTCATTAAAGAATATCAATGGGAATCAAGTTCA
ACTGCTAAATCAAAATTATTTATTCAATTATTATTACTTTGTTCTTCTTGGGCACAAACT
TCATTACCATATCATATTGAAAAAGTTGAATCAAATGATCAATTATTTACAGAAGATCCA
GAGTTTAATACAGAATTAACAGAATTTTATAATTCATTAATTAAAGAAATTTTATATGAT
TTAAATCTTTTGAAAGATGAACCAGATAATTTAACACAGAAAAAAGTTGGTATCATTTGT
ATTGATTTAATAAATGCATTATTAAATGTTGGTGAATTAAATAGTAAGACAGCATCATTA
ATTTTCAATTTATATAATAGGGCAAAGAAAATTATACCATCAACNTGTTTCAGATGAAAT
TACATATTTAAAGAATACTCTTGCTTTTATTGGAAC
Length of connected seq. 746
Full length Seq ID -
Full length Seq. -
Length of full length seq. -