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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF196
Library VH
(Link to library)
Clone ID VHF196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11214-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF196 (VHF196Q) /CSM/VH/VHF1-D/VHF196Q.Seq.d/
AATAAAGAAAATTAAATGTTTAAATAACAAATACAAATACATATCAATAATTAATAATAA
TAATAATAACAATAATAAAAATAATAATAATATTAGTGAAATCATAAATTTAAATTAAAT
ATAATATTCAAATAATAAATAATAATTAATTAATTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
IKKIKCLNNKYKYISIINNNNNNNNKNNNNISEIINLN*i*ysnnk**lin*kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
nken*mfk*qiqihinn******q**k***y**nhkfklniifk**iiin*lkk---


Frame B:
IKKIKCLNNKYKYISIINNNNNNNNKNNNNISEIINLN*i*ysnnk**lin*kk---


Frame C:
*rklnv*itntntyq*liiiiitiikiiiilvks*i*ikyniqiinnn*likkk---
Homology vs CSM-cDNA -
own update ----------
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 5.25
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 34,166,879
protein update 2009. 7. 2
PSORT 

 psg: 0.70  gvh: -0.09  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHF196 is nuc
5' end seq. ID VHF196F
5' end seq. 
>VHF196F.Seq
AATAAAGAAAATTAAATGTTTAAATAACAAATACAAATACATATCAATAATTAATAATAA
TAATAATAACAATAATAAAAATAATAATAATATTAGTGAAATCATAAATTTAAATTAAAT
ATAATATTCAAATAATAAATAATAATTAATTAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 175
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -