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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF190
Library VH
(Link to library)
Clone ID VHF190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12594-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHF190 (VHF190Q) /CSM/VH/VHF1-D/VHF190Q.Seq.d/
ATTTTTCATTTTAAAAAATTTTAATACAAACCAAAATAATTAATTAATTAATTAATTCAA
CAAATAAAAATAATGTCCAGCAGTGTCAGCAAACTTTTAAAATTAACTCGTGCTTCAATG
ATTGCAGCTCCAAAGAGATCCATTGCTTTCAGAGGTGATGAATTCAAAGAAAGAGAAGAA
GCTTTTGAAAGCCAATATGTTAAACAAAAAGAAAGAGATGATTTAAAGAGAATGGCTGAA
AAGAAGAAACAAGAAGAAACCAAAAAAGCTGGCTCACAACCAACTCCAAATGCATCATCA
TCAGCCAACAATTCCAAAGCTGCCAAGATTAAGGAAATTGAAGATAAAATTAGCAAATTA
CAAAAAGAACTTGCCGATTTAAAAAAATAAATCAAAATCCCTGTGTTTTTATAAATAAAT
AAATAAATAAATATATTAATATATAAATATATAAATAAAAAATAAATAAATAAAATAAAT
AAATAAATAATGGCCATCAATAATAAATAAATAAATAAGTAATAATAAATAAATAAAAAA
ATTAAAAAAATTAAAATTTTTTTTTTTTTTAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ifhfkkf*ykpk*lin*LIQQIKIMSSSVSKLLKLTRASMIAAPKRSIAFRGDEFKEREE
AFESQYVKQKERDDLKRMAEKKKQEETKKAGSQPTPNASSSANNSKAAKIKEIEDKISKL
QKELADLKK*ikipvfl*ink*iniliykyinkk*inkink*imainnk*ink***inkk
ikkikiffff---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifhfkkf*ykpk*lin*LIQQIKIMSSSVSKLLKLTRASMIAAPKRSIAFRGDEFKEREE
AFESQYVKQKERDDLKRMAEKKKQEETKKAGSQPTPNASSSANNSKAAKIKEIEDKISKL
QKELADLKK*ikipvfl*ink*iniliykyinkk*inkink*imainnk*ink***inkk
ikkikiffff---


Frame B:
ffilknfntnqnn*lin*fnk*k*cpavsanf*n*lvlq*lqlqrdpllsevmnskkekk
llkanmlnkkkemi*rewlkrrnkkkpkklahnqlqmhhhqptipklprlrklkiklany
kknlpi*knkskslcfyk*ink*iy*yini*iknk*ik*ink*wpsiink*isnnk*ikk
lkklkffff---


Frame C:
fsf*kiliqtkiin*linstnknnvqqcqqtfkinscfndcsskeihcfqr**iqrkrrs
f*kpic*tkrkr*fkeng*keetrrnqkswlttnskciiisqqfqscqd*gn*r*n*qit
krtcrfkkinqnpcvfink*inkyini*iyk*kink*nk*innghq**ink*viink*kn
*kn*nffff---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK372 (VSK372Q) /CSM/VS/VSK3-C/VSK372Q.Seq.d/                        622   e-177
VSJ436 (VSJ436Q) /CSM/VS/VSJ4-B/VSJ436Q.Seq.d/                        622   e-177
VSJ213 (VSJ213Q) /CSM/VS/VSJ2-A/VSJ213Q.Seq.d/                        622   e-177
VSI712 (VSI712Q) /CSM/VS/VSI7-A/VSI712Q.Seq.d/                        622   e-177
VSF706 (VSF706Q) /CSM/VS/VSF7-A/VSF706Q.Seq.d/                        622   e-177
VSD852 (VSD852Q) /CSM/VS/VSD8-C/VSD852Q.Seq.d/                        622   e-177
VSD770 (VSD770Q) /CSM/VS/VSD7-C/VSD770Q.Seq.d/                        622   e-177
VSD470 (VSD470Q) /CSM/VS/VSD4-C/VSD470Q.Seq.d/                        622   e-177
VSD190 (VSD190Q) /CSM/VS/VSD1-D/VSD190Q.Seq.d/                        622   e-177
VSC468 (VSC468Q) /CSM/VS/VSC4-C/VSC468Q.Seq.d/                        622   e-177
own update 2002.12.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF311910|AF311910.1 Dictyostelium discoideum F1F0-ATPase putative regulatory protein IF1 (if1) mRNA, complete cds; nuclear gene for mitochondrial product.   252   e-121  2
BF015082|BF015082.1 kq64a10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to contains element MER33 repetitive element ;, mRNA sequence.    36   0.095  2
BE579269|BE579269.1 kq25a04.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to contains element L1 repetitive element ;, mRNA sequence.    36   0.10   2
AL358196|AL358196.11 Human DNA sequence from clone RP11-596L14 on chromosome 10.    48   0.19   2
CP000742|CP000742.1 Methanococcus vannielii SB, complete genome.    48   0.30   1
BX957221|BX957221.1 Methanococcus maripaludis S2 complete genome; segment 3/5.    48   0.30   1
BI056077|BI056077.1 RC5-GN0282-150201-012-D05 GN0282 Homo sapiens cDNA, mRNA sequence.    46   1.2    1
BI055456|BI055456.1 RC5-GN0282-060201-012-D05 GN0282 Homo sapiens cDNA, mRNA sequence.    46   1.2    1
AC100517|AC100517.1 Mus musculus clone RP23-145I15, LOW-PASS SEQUENCE SAMPLING.    46   1.2    1
EJ095085|EJ095085.1 1095460280173 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005741993 5', genomic survey sequence.    46   1.2    1
dna update 2007.10.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007166_219(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    32   9.5
protein update 2009. 3. 1
PSORT 

 psg: 0.78  gvh: 0.46  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.07
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHF190 is mit
5' end seq. ID VHF190F
5' end seq. 
>VHF190F.Seq
ATTTTTCATTTTAAAAAATTTTAATACAAACCAAAATAATTAATTAATTAATTAATTCAA
CAAATAAAAATAATGTCCAGCAGTGTCAGCAAACTTTTAAAATTAACTCGTGCTTCAATG
ATTGCAGCTCCAAAGAGATCCATTGCTTTCAGAGGTGATGAATTCAAAGAAAGAGAAGAA
GCTTTTGAAAGCCAATATGTTAAACAAAAAGAAAGAGATGATTTAAAGAGAATGGCTGAA
AAGAAGAAACAAGAAGAAACCAAAAAAGCTGGCTCACAACCAACTCCAAATGCATCATCA
TCAGCCAACAATTCCAAAGCTGCCAAGATTAAGGAAATTGAAGATAAAATTAGCAAATTA
CAAAAAGAACTTGCCGATTTAAAAAAATAAATCAAAATCCCTGTGTTTTTATAAATAAAT
AAATAAATAAATATATTAATATATAAATATATAAATAAAAAATAAATAAATAAAATAAAT
AAATAAATAATGGCCATCAATAATAAATAAATAAATAAGTAATAATAAATAAATAAAAAA
ATTAAAAAAATTAAAATTTTTTTTTTTTTTANNNNNNNNNN
Length of 5' end seq. 581
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -