VHF189
Library VH
(Link to library)
Clone ID VHF189
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12323-1|Contig-U13628-1
Original site URL
Representative seq. ID VHF189P
(Link to Original site)
Representative DNA sequence
>VHF189 (VHF189Q) /CSM/VH/VHF1-D/VHF189Q.Seq.d/
AAAAGCAGAAAACTTCAAAAAAAAAAATTACCCAAAAAATGAAATACAATTTACCAATAT
TAATTATCCTTTTGATTTCATTTATATCTTTTGTAAACTCTGTTGATCTTGTTTCTGAAN
AGGTNCCATATCTTTATAGTACTATTCAAAAAGTTAATGACNCAAAACTTAATATACCAA
ACATTGAANCAATAATATGTAGNGGGGTATTTTTTGGTTCAAGGNGTAATTCCAACGGAA
ATTTAAAATCTTTGACATTGANATCCACAACAAATGAAATTTTAAGTTGGAGTGATTTTA
ATGGGTTCACTAAACTTTACTATTTATATATGGCANAAGTTTCGGTANATCAAAATTTTG
CATACTTTCCAATTCCCTCAATAGGCTATTTATCAATTCACAATAAACTATACTTTGAAT
TTGATAAAGTCCTTCCAAAATATGATAATTTTTATATTAATTTTCAAGGANAAGGAATTA
ATAGTCACATGAATATTAAAGCATCTTATTTGAAAGATGTAACAAGTTTCACTGTTTTGG
GAGCAXXXXXXXXXXTCACTAAAATAATTTCAAAAGATGATAAAAAAGTTTTAATTTCAC
TTGATATGCNTCATTGTAATCAATGTTTATTAGATCCAGATTTTTCAGTTATTATTAATT
CAGATTTTAAGTCATCAGATTCATGTGGCAAAGAAAATAAAAAACNTTGGTTAATTCCAG
TTGCTGTCNCTGTACNTGTTGTTGGTTGTGCTTTAATAATTGCAGCATTCATGTTAAGAA
AAAAGATTCATAGCNATAAAATACTTCTTAATAAATTTGGTGGTAAATAACT
sequence update 2002.10.25
Translated Amino Acid sequence
KQKTSKKKITQKMKYNLPILIILLISFISFVNSVDLVSEXVPYLYSTIQKVNDXKLNIPN
IEXIICXGVFFGSRXNSNGNLKSLTLXSTTNEILSWSDFNGFTKLYYLYMAXVSVXQNFA
YFPIPSIGYLSIHNKLYFEFDKVLPKYDNFYINFQGXGINSHMNIKASYLKDVTSFTVLG
A---

---TKIISKDDKKVLISLDMXHCNQCLLDPDFSVIINSDFKSSDSCGKENKKXWLIPVAV
XVXVVGCALIIAAFMLRKKIHSXKILLNKFGGK*


Translated Amino Acid sequence (All Frames)
Frame A:
ksrklqkkklpkk*ntiyqy*lsf*fhlyll*tllilflxrxhifivlfkklmtqnliyq
tlxq*yvxgyflvqgviptei*nl*h*xpqqmkf*vgvilmgslnftiyiwxkfrxikil
htfqfpq*aiyqftinytlnliksfqnmiifilifkxkelivt*ilkhli*km*qvslfw
e---

---slk*fqkmikkf*fhlicxivinvy*iqifqllliqilshqihvakkiknxg*fqll
slyxllvvl**lqhsc*ekrfiaikyflinlvvnn

Frame B:
kaenfkkknypkneiqftninypfdfiyifcklc*scf*xgxisl*yysks**xkt*ytk
h*xnnm*xgifwfkx*fqrkfkifdixihnk*nfkle*f*wvh*tllfiygxsfgxskfc
ilsnslnrlfinsq*til*i**spski**fly*fsrxrn**shey*silfercnkfhcfg
s---

---h*nnfkr**ksfnft*yasl*smfirsrffsyy*frf*virfmwqrk*ktlvnsscc
xctccwlcfnncsihvkkkds*x*nts**iww*it

Frame C:
KQKTSKKKITQKMKYNLPILIILLISFISFVNSVDLVSEXVPYLYSTIQKVNDXKLNIPN
IEXIICXGVFFGSRXNSNGNLKSLTLXSTTNEILSWSDFNGFTKLYYLYMAXVSVXQNFA
YFPIPSIGYLSIHNKLYFEFDKVLPKYDNFYINFQGXGINSHMNIKASYLKDVTSFTVLG
A---

---TKIISKDDKKVLISLDMXHCNQCLLDPDFSVIINSDFKSSDSCGKENKKXWLIPVAV
XVXVVGCALIIAAFMLRKKIHSXKILLNKFGGK*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF189 (VHF189Q) /CSM/VH/VHF1-D/VHF189Q.Seq.d/ 1447 0.0
VHK121 (VHK121Q) /CSM/VH/VHK1-A/VHK121Q.Seq.d/ 948 0.0
VHO120 (VHO120Q) /CSM/VH/VHO1-A/VHO120Q.Seq.d/ 519 e-146
VHG580 (VHG580Q) /CSM/VH/VHG5-D/VHG580Q.Seq.d/ 519 e-146
VHD603 (VHD603Q) /CSM/VH/VHD6-A/VHD603Q.Seq.d/ 519 e-146
VFI529 (VFI529Q) /CSM/VF/VFI5-B/VFI529Q.Seq.d/ 519 e-146
VHL840 (VHL840Q) /CSM/VH/VHL8-B/VHL840Q.Seq.d/ 504 e-141
VHD138 (VHD138Q) /CSM/VH/VHD1-B/VHD138Q.Seq.d/ 490 e-137
VHM358 (VHM358Q) /CSM/VH/VHM3-C/VHM358Q.Seq.d/ 474 e-132
VHG888 (VHG888Q) /CSM/VH/VHG8-D/VHG888Q.Seq.d/ 474 e-132

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 515 0.0 7
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome. 38 0.067 18
BX005278|BX005278.8 Zebrafish DNA sequence from clone CH211-194P15. 38 0.19 3
DR394287|DR394287.1 USDA-FP_154221 Adult Alate Aphis gossypii (WHAGA) Aphis gossypii cDNA clone WHAGA071_E11 5', mRNA sequence. 40 0.29 2
AM483561|AM483561.1 Vitis vinifera contig VV78X192293.7, whole genome shotgun sequence. 36 0.32 4
CP000825|CP000825.1 Prochlorococcus marinus str. MIT 9215, complete genome. 36 0.39 19
AM622822|AM622822.1 Entamoeba invadens IP1 GSS, clone inv108a05.p1k. 48 0.44 1
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence. 32 0.48 10
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3. 34 0.80 10
DW765915|DW765915.1 MSAM115882_1359_3148 LCM-dissected maize shoot apical meristem cDNA Zea mays cDNA, mRNA sequence. 38 0.85 2
dna update 2007.10.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso... 140 4e-32
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 63 1e-08
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 59 2e-07
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 59 3e-07
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 54 8e-06
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 54 8e-06
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 52 2e-05
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 52 2e-05
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 52 2e-05
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 52 3e-05
protein update 2009. 3. 1
PSORT

psg: 0.55 gvh: 0.78 alm: 0.19 top: -0.13 tms: 0.13 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
24.0 %: mitochondrial
12.0 %: plasma membrane
12.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VHF189 is end

5' end seq. ID VHF189F
5' end seq.
>VHF189F.Seq
AAAAGCAGAAAACTTCAAAAAAAAAAATTACCCAAAAAATGAAATACAATTTACCAATAT
TAATTATCCTTTTGATTTCATTTATATCTTTTGTAAACTCTGTTGATCTTGTTTCTGAAN
AGGTNCCATATCTTTATAGTACTATTCAAAAAGTTAATGACNCAAAACTTAATATACCAA
ACATTGAANCAATAATATGTAGNGGGGTATTTTTTGGTTCAAGGNGTAATTCCAACGGAA
ATTTAAAATCTTTGACATTGANATCCACAACAAATGAAATTTTAAGTTGGAGTGATTTTA
ATGGGTTCACTAAACTTTACTATTTATATATGGCANAAGTTTCGGTANATCAAAATTTTG
CATACTTTCCAATTCCCTCAATAGGCTATTTATCAATTCACAATAAACTATACTTTGAAT
TTGATAAAGTCCTTCCAAAATATGATAATTTTTATATTAATTTTCAAGGANAAGGAATTA
ATAGTCACATGAATATTAAAGCATCTTATTTGAAAGATGTAACAAGTTTCACTGTTTTGG
GAGCANNNNNNNNNN
Length of 5' end seq. 555
3' end seq. ID VHF189Z
3' end seq.
>VHF189Z.Seq
NNNNNNNNNNTCACTAAAATAATTTCAAAAGATGATAAAAAAGTTTTAATTTCACTTGAT
ATGCNTCATTGTAATCAATGTTTATTAGATCCAGATTTTTCAGTTATTATTAATTCAGAT
TTTAAGTCATCAGATTCATGTGGCAAAGAAAATAAAAAACNTTGGTTAATTCCAGTTGCT
GTCNCTGTACNTGTTGTTGGTTGTGCTTTAATAATTGCAGCATTCATGTTAAGAAAAAAG
ATTCATAGCNATAAAATACTTCTTAATAAATTTGGTGGTAAATAACT
Length of 3' end seq. 287
Connected seq. ID VHF189P
Connected seq.
>VHF189P.Seq
AAAAGCAGAAAACTTCAAAAAAAAAAATTACCCAAAAAATGAAATACAATTTACCAATAT
TAATTATCCTTTTGATTTCATTTATATCTTTTGTAAACTCTGTTGATCTTGTTTCTGAAN
AGGTNCCATATCTTTATAGTACTATTCAAAAAGTTAATGACNCAAAACTTAATATACCAA
ACATTGAANCAATAATATGTAGNGGGGTATTTTTTGGTTCAAGGNGTAATTCCAACGGAA
ATTTAAAATCTTTGACATTGANATCCACAACAAATGAAATTTTAAGTTGGAGTGATTTTA
ATGGGTTCACTAAACTTTACTATTTATATATGGCANAAGTTTCGGTANATCAAAATTTTG
CATACTTTCCAATTCCCTCAATAGGCTATTTATCAATTCACAATAAACTATACTTTGAAT
TTGATAAAGTCCTTCCAAAATATGATAATTTTTATATTAATTTTCAAGGANAAGGAATTA
ATAGTCACATGAATATTAAAGCATCTTATTTGAAAGATGTAACAAGTTTCACTGTTTTGG
GAGCA----------TCACTAAAATAATTTCAAAAGATGATAAAAAAGTTTTAATTTCAC
TTGATATGCNTCATTGTAATCAATGTTTATTAGATCCAGATTTTTCAGTTATTATTAATT
CAGATTTTAAGTCATCAGATTCATGTGGCAAAGAAAATAAAAAACNTTGGTTAATTCCAG
TTGCTGTCNCTGTACNTGTTGTTGGTTGTGCTTTAATAATTGCAGCATTCATGTTAAGAA
AAAAGATTCATAGCNATAAAATACTTCTTAATAAATTTGGTGGTAAATAACT
Length of connected seq. 822
Full length Seq ID -
Full length Seq. -
Length of full length seq. -