NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF186
Library VH
(Link to library)
Clone ID VHF186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11024-1|Contig-U13601-1
Original site URL
Representative seq. ID VHF186P
(Link to Original site)
Representative DNA sequence 
>VHF186 (VHF186Q) /CSM/VH/VHF1-D/VHF186Q.Seq.d/
ATCTGTCTATTGTTAATCTATTATTTTATTTTATTTTTTTGTAAATTACAATTGACAAGT
ATAAAGAATGACAGATTTTATTAGAGGTAAAACTCAACATAAAGTTATCTCAGAGAAATT
AGAAGATCAAGAAATTGTTAGTACAAAGAGAATTACACCAAAGAGAGTTAAAAATGATGA
TAAAGATAAAAAAGTTAACAAGAAACAAAAAACTTCAAATCAATTAGCACCAATTATCAC
TGAAGAAGGTAATGGTATAGCAGATTCTGATGAAGATGATGATAATAATGATAACAATGA
CGAAAAAAAAGTTTCAGCTGAAGAAGAAAAAGATAGAAACCTTTTTGCATCTGCTTATAA
TAGTTTAAAGGGTAAAAAGAAAGCTAAATTAGTTTCAAAAATTGATAAACTTACACCATC
TCAATTAAAAGAATATATGAATGAACCAACAACTCAATTAAATAAAAAAGAAGAAGCTGA
TGCTAAAAAGTNNTTACCTTTCTTAAAAAAGAATATTCCAAAATCTGCATGTAGATTACT
TAAAAAAGATTTACATACTGGTATGGTAGTATTAGCAACATTTGAACAAGTTACAGAAAT
GGATATTACAATXXXXXXXXXXAATGATTTATCTTGTGGTATGGTCGTTCAAGGTGTAAT
TAGATATGTTCGTGCCGATTCATTAGAGGTTGAATTGGCCACCTCAATTCATGGTGTAGT
CGCTAGACATCATATGGCCGATACTAATATCACCGATCCTTTGGAATTCTTTAAAGTTGG
TGCAACTGTAAAAGTACGTATTATAAATGTTGAGCCAGATAAGAAACGTCTTCAATTAAC
TCTCAAGAAATCNTTAATCTACTCAGAGTATCCAATCATTACCGATAAAAACACTACCCC
AATTGGTACTATNTCTCATGGTATCATCACTAAAACCACTAAATTCCTCGTTTTCGTNTC
TTTTTACAATAATAGTTTTGGTGTTGTTGAAGCTCAAAATCTTTCAAATAGTAAAATTGA
ATCCGTTCAAAAACAATTCCCTGTTGGTCGTACAGTTTTAGCTAAAACTTTATTNTCTGA
AAGTAGTAAATCTCAACCTGGTTTACCTTTGACTTTAGTAATTGATGATGATGATTTTAA
TTCACAACCACAACCAAATTCAAATAAAAAATCAAATAATAGTAATAATAAGAAAGAAAA
TAAAAAAGTGGAAAATAAAAAAGTAGAAGAGGAAAAAGTTGAAGAAGAAGGAAAAGAAGA
AGAAGAAAAAGTAAAANAAGNAAGAAAAAAAACA
sequence update 2002.10.25
Translated Amino Acid sequence 
svyc*siilfyffvnyn*qv*RMTDFIRGKTQHKVISEKLEDQEIVSTKRITPKRVKNDD
KDKKVNKKQKTSNQLAPIITEEGNGIADSDEDDDNNDNNDEKKVSAEEEKDRNLFASAYN
SLKGKKKAKLVSKIDKLTPSQLKEYMNEPTTQLNKKEEADAKKXLPFLKKNIPKSACRLL
KKDLHTGMVVLATFEQVTEMDIT---

---NDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVK
VRIINVEPDKKRLQLTLKKSLIYSEYPIITDKNTTPIGTXSHGIITKTTKFLVFVSFYNN
SFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTLXSESSKSQPGLPLTLVIDDDDFNSQPQ
PNSNKKSNNSNNKKENKKVENKKVEEEKVEEEGKEEEEKVKXXRKKT
Translated Amino Acid sequence (All Frames) 
Frame A:
icllliyyfilffcklqltsikndrfy*r*nst*sylreirrsrnc*ykenytkes*k**
*r*ks*qetknfksistnyh*rr*wysrf**r******q*rkksfs*rrkr*kpfcicl*
*fkg*kes*isfkn**tytisikriye*tnnsik*krrs*c*kvxtflkkeyskicm*it
*krftywygsisni*tsyrngyyn---

---NDLSCGMVVQGVIRYVRADSLEVELATSIHGVVARHHMADTNITDPLEFFKVGATVK
VRIINVEPDKKRLQLTLKKSLIYSEYPIITDKNTTPIGTXSHGIITKTTKFLVFVSFYNN
SFGVVEAQNLSNSKIESVQKQFPVGRTVLAKTLXSESSKSQPGLPLTLVIDDDDFNSQPQ
PNSNKKSNNSNNKKENKKVENKKVEEEKVEEEGKEEEEKVKXXRKKT

Frame B:
svyc*siilfyffvnyn*qv*RMTDFIRGKTQHKVISEKLEDQEIVSTKRITPKRVKNDD
KDKKVNKKQKTSNQLAPIITEEGNGIADSDEDDDNNDNNDEKKVSAEEEKDRNLFASAYN
SLKGKKKAKLVSKIDKLTPSQLKEYMNEPTTQLNKKEEADAKKXLPFLKKNIPKSACRLL
KKDLHTGMVVLATFEQVTEMDIT---

---miylvvwsfkv*ldmfvpih*rlnwppqfmv*sldiiwpilispilwnslklvql*k
yvl*mlsqirnvfn*lsrnx*stqsiqslpiktlpqlvlxlmvsslkplnssfsxlftii
vlvllklkifqivklnpfknnsllvvqf*lklyxlkvvnlnlvyl*l**lmmmilihnhn
qiqiknqiiviirkkikkwkikk*krkklkkkekkkkkk*xkxekk

Frame C:
lsivnllfyfifl*itidkyke*qillevklniklsqrn*kikkllvqrelhqrelkmmi
kikkltrnkklqin*hqlslkkvmv*qilmkmmiimitmtkkkfqlkkkkietflhllii
v*rvkrkln*fqklinlhhln*kni*mnqqln*ikkkklmlksxyls*krifqnlhvdyl
kkiyilvw*y*qhlnklqkwilq---

---*filwygrsrcn*icscrfirg*ighlnswcsr*tsygry*yhrsfgil*swcncks
tyykc*ar*etssinsqeixnllrvsnhyr*khypnwyyxswyhh*nh*iprfrxflq**
fwcc*ssksfk**n*irsktipcwsysfs*nfix*k**istwftfdfsn****f*ftttt
kfk*kik*****erk*ksgk*ksrrgks*rrrkrrrrkskxxkkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF186 (VHF186Q) /CSM/VH/VHF1-D/VHF186Q.Seq.d/                       1725   0.0
VHO738 (VHO738Q) /CSM/VH/VHO7-B/VHO738Q.Seq.d/                       1023   0.0
VHD570 (VHD570Q) /CSM/VH/VHD5-C/VHD570Q.Seq.d/                       1023   0.0
VHF371 (VHF371Q) /CSM/VH/VHF3-C/VHF371Q.Seq.d/                        967   0.0
AFK624 (AFK624Q) /CSM/AF/AFK6-A/AFK624Q.Seq.d/                        244   3e-63
VHG434 (VHG434Q) /CSM/VH/VHG4-B/VHG434Q.Seq.d/                         44   0.005
VHC858 (VHC858Q) /CSM/VH/VHC8-C/VHC858Q.Seq.d/                         44   0.005
VHB308 (VHB308Q) /CSM/VH/VHB3-A/VHB308Q.Seq.d/                         44   0.005
SSC558 (SSC558Q) /CSM/SS/SSC5-C/SSC558Q.Seq.d/                         44   0.005
CHR308 (CHR308Q) /CSM/CH/CHR3-A/CHR308Q.Seq.d/                         44   0.005
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC209104|AC209104.1 Populus trichocarpa clone POP085-O03, complete sequence.    46   6e-04  2
AC176535|AC176535.1 Strongylocentrotus purpuratus clone R3-3075L03, WORKING DRAFT SEQUENCE, 27 unordered pieces.    58   7e-04  1
AZ182812|AZ182812.1 SP_0190_A1_D08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=190 Col=15 Row=G, DNA sequence.    58   7e-04  1
EL496972|EL496972.1 H05_PFBAMHI-L-T3-PLATE14A.AB1 Blood stage Plasmodium falciparum cDNA library PfBamH1 Plasmodium falciparum 3D7 cDNA, mRNA sequence.    44   0.001  2
EL507592|EL507592.1 D04_PF-SAU3A-T3-M-P33_D.AB1 Blood stage Plasmodium falciparum cDNA library PfSau3a Plasmodium falciparum 3D7 cDNA, mRNA sequence.    44   0.002  2
EL507591|EL507591.1 D04_PF-SAU3A-T3-M-P33.AB1 Blood stage Plasmodium falciparum cDNA library PfSau3a Plasmodium falciparum 3D7 cDNA, mRNA sequence.    44   0.002  2
AC178744|AC178744.1 Strongylocentrotus purpuratus clone R3-15J3, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42   0.008  2
AC110954|AC110954.4 Rattus norvegicus clone CH230-62F5, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    54   0.011  1
AC201297|AC201297.1 Strongylocentrotus purpuratus clone R3-16H21, WORKING DRAFT SEQUENCE, 19 unordered pieces.    54   0.011  1
AC180656|AC180656.1 Strongylocentrotus purpuratus clone R3-3019N12, WORKING DRAFT SEQUENCE, 28 unordered pieces.    54   0.011  1
dna update 2007.10.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF055668_1(AF055668|pid:none) Mus musculus apoptosis-linked gene...    94   8e-18
AK294971_1(AK294971|pid:none) Homo sapiens cDNA FLJ54437 partial...    94   1e-17
BC064486_1(BC064486|pid:none) Homo sapiens programmed cell death...    94   1e-17
(Q14690) RecName: Full=Protein RRP5 homolog; AltName: Full=Progr...    94   1e-17
BC049838_1(BC049838|pid:none) Homo sapiens programmed cell death...    94   1e-17
AK293772_1(AK293772|pid:none) Homo sapiens cDNA FLJ61218 complet...    94   1e-17
BC111040_1(BC111040|pid:none) Homo sapiens programmed cell death...    94   1e-17
AK129080_1(AK129080|pid:none) Mus musculus mRNA for mKIAA0185 pr...    92   5e-17
CR812943_5(CR812943|pid:none) Zebrafish DNA sequence from clone ...    92   5e-17
BC070468_1(BC070468|pid:none) Mus musculus programmed cell death...    89   5e-16
protein update 2009. 7. 2
PSORT 

 psg: 0.58  gvh: 0.14  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.24  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 16.0 %: cytoplasmic

>> prediction for VHF186 is nuc
5' end seq. ID VHF186F
5' end seq. 
>VHF186F.Seq
ATCTGTCTATTGTTAATCTATTATTTTATTTTATTTTTTTGTAAATTACAATTGACAAGT
ATAAAGAATGACAGATTTTATTAGAGGTAAAACTCAACATAAAGTTATCTCAGAGAAATT
AGAAGATCAAGAAATTGTTAGTACAAAGAGAATTACACCAAAGAGAGTTAAAAATGATGA
TAAAGATAAAAAAGTTAACAAGAAACAAAAAACTTCAAATCAATTAGCACCAATTATCAC
TGAAGAAGGTAATGGTATAGCAGATTCTGATGAAGATGATGATAATAATGATAACAATGA
CGAAAAAAAAGTTTCAGCTGAAGAAGAAAAAGATAGAAACCTTTTTGCATCTGCTTATAA
TAGTTTAAAGGGTAAAAAGAAAGCTAAATTAGTTTCAAAAATTGATAAACTTACACCATC
TCAATTAAAAGAATATATGAATGAACCAACAACTCAATTAAATAAAAAAGAAGAAGCTGA
TGCTAAAAAGTNNTTACCTTTCTTAAAAAAGAATATTCCAAAATCTGCATGTAGATTACT
TAAAAAAGATTTACATACTGGTATGGTAGTATTAGCAACATTTGAACAAGTTACAGAAAT
GGATATTACAATNNNNNNNNNN
Length of 5' end seq. 622
3' end seq. ID VHF186Z
3' end seq. 
>VHF186Z.Seq
NNNNNNNNNNAATGATTTATCTTGTGGTATGGTCGTTCAAGGTGTAATTAGATATGTTCG
TGCCGATTCATTAGAGGTTGAATTGGCCACCTCAATTCATGGTGTAGTCGCTAGACATCA
TATGGCCGATACTAATATCACCGATCCTTTGGAATTCTTTAAAGTTGGTGCAACTGTAAA
AGTACGTATTATAAATGTTGAGCCAGATAAGAAACGTCTTCAATTAACTCTCAAGAAATC
NTTAATCTACTCAGAGTATCCAATCATTACCGATAAAAACACTACCCCAATTGGTACTAT
NTCTCATGGTATCATCACTAAAACCACTAAATTCCTCGTTTTCGTNTCTTTTTACAATAA
TAGTTTTGGTGTTGTTGAAGCTCAAAATCTTTCAAATAGTAAAATTGAATCCGTTCAAAA
ACAATTCCCTGTTGGTCGTACAGTTTTAGCTAAAACTTTATTNTCTGAAAGTAGTAAATC
TCAACCTGGTTTACCTTTGACTTTAGTAATTGATGATGATGATTTTAATTCACAACCACA
ACCAAATTCAAATAAAAAATCAAATAATAGTAATAATAAGAAAGAAAATAAAAAAGTGGA
AAATAAAAAAGTAGAAGAGGAAAAAGTTGAAGAAGAAGGAAAAGAAGAAGAAGAAAAAGT
AAAANAAGNAAGAAAAAAAACA
Length of 3' end seq. 682
Connected seq. ID VHF186P
Connected seq. 
>VHF186P.Seq
ATCTGTCTATTGTTAATCTATTATTTTATTTTATTTTTTTGTAAATTACAATTGACAAGT
ATAAAGAATGACAGATTTTATTAGAGGTAAAACTCAACATAAAGTTATCTCAGAGAAATT
AGAAGATCAAGAAATTGTTAGTACAAAGAGAATTACACCAAAGAGAGTTAAAAATGATGA
TAAAGATAAAAAAGTTAACAAGAAACAAAAAACTTCAAATCAATTAGCACCAATTATCAC
TGAAGAAGGTAATGGTATAGCAGATTCTGATGAAGATGATGATAATAATGATAACAATGA
CGAAAAAAAAGTTTCAGCTGAAGAAGAAAAAGATAGAAACCTTTTTGCATCTGCTTATAA
TAGTTTAAAGGGTAAAAAGAAAGCTAAATTAGTTTCAAAAATTGATAAACTTACACCATC
TCAATTAAAAGAATATATGAATGAACCAACAACTCAATTAAATAAAAAAGAAGAAGCTGA
TGCTAAAAAGTNNTTACCTTTCTTAAAAAAGAATATTCCAAAATCTGCATGTAGATTACT
TAAAAAAGATTTACATACTGGTATGGTAGTATTAGCAACATTTGAACAAGTTACAGAAAT
GGATATTACAAT----------AATGATTTATCTTGTGGTATGGTCGTTCAAGGTGTAAT
TAGATATGTTCGTGCCGATTCATTAGAGGTTGAATTGGCCACCTCAATTCATGGTGTAGT
CGCTAGACATCATATGGCCGATACTAATATCACCGATCCTTTGGAATTCTTTAAAGTTGG
TGCAACTGTAAAAGTACGTATTATAAATGTTGAGCCAGATAAGAAACGTCTTCAATTAAC
TCTCAAGAAATCNTTAATCTACTCAGAGTATCCAATCATTACCGATAAAAACACTACCCC
AATTGGTACTATNTCTCATGGTATCATCACTAAAACCACTAAATTCCTCGTTTTCGTNTC
TTTTTACAATAATAGTTTTGGTGTTGTTGAAGCTCAAAATCTTTCAAATAGTAAAATTGA
ATCCGTTCAAAAACAATTCCCTGTTGGTCGTACAGTTTTAGCTAAAACTTTATTNTCTGA
AAGTAGTAAATCTCAACCTGGTTTACCTTTGACTTTAGTAATTGATGATGATGATTTTAA
TTCACAACCACAACCAAATTCAAATAAAAAATCAAATAATAGTAATAATAAGAAAGAAAA
TAAAAAAGTGGAAAATAAAAAAGTAGAAGAGGAAAAAGTTGAAGAAGAAGGAAAAGAAGA
AGAAGAAAAAGTAAAANAAGNAAGAAAAAAAACA
Length of connected seq. 1284
Full length Seq ID -
Full length Seq. -
Length of full length seq. -