VHF183
Library VH
(Link to library)
Clone ID VHF183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16172-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHF183 (VHF183Q) /CSM/VH/VHF1-D/VHF183Q.Seq.d/
ATACAAATTATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAA
CTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACT
CAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAA
GCTTGGTGTTCATCAATCGTAGATACCAACCAATACATTGTTGCTGGTTGTGAAGTTCCA
CGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGTTACATCA
TACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCT
ATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGA
GCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAA
TTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGC
GATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAXXXXXXXXX
X
sequence update 2002.10.25
Translated Amino Acid sequence
IQIIFLNNKIYKMSTQGLVQLISNAQCHLRTSTNYNDVHTQFNAVLNYKNKGTNTIDGSE
AWCSSIVDTNQYIVAGCEVPRTFMCVALQGRGDHDQWVTSYKIRYSLDNVTWSEYRNGAA
ITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQVGADIYTG
DNCALNTGSGKREVVV---


Translated Amino Acid sequence (All Frames)
Frame A:
IQIIFLNNKIYKMSTQGLVQLISNAQCHLRTSTNYNDVHTQFNAVLNYKNKGTNTIDGSE
AWCSSIVDTNQYIVAGCEVPRTFMCVALQGRGDHDQWVTSYKIRYSLDNVTWSEYRNGAA
ITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYTQPVQSSVTQVGADIYTG
DNCALNTGSGKREVVV---


Frame B:
yklsf*iikfikclpkv*fnlsqmlnvi*epqpitmmstlnlmlf*tiktkvpillmvqk
lgvhqs*iptntlllvvkfhvllcvllskvvviminglhhtksvih*imlpglnivmvll
llv*livtllliislilqlelvqllsth*pgittfh*dvnstlnqykaqslklvqiftla
itvp*ipvqvnvklls---


Frame C:
tnylfk**nl*nvyprfsstylkcsmsfknlnqlq*cphsi*ccfkl*kqryqyy*wfrs
lvfinrryqpihccwl*sstyfyvccsprsw*s*smgyiiqnplfir*cylv*is*wccy
ywcn*s*hcc*sfl*ysn*ssfncyppinle*phfikm*ilhststklshsswcrylhwr
*lclkyrfr*t*sccp---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP309 (VHP309Q) /CSM/VH/VHP3-A/VHP309Q.Seq.d/ 1172 0.0
VHG652 (VHG652Q) /CSM/VH/VHG6-C/VHG652Q.Seq.d/ 1172 0.0
VHF183 (VHF183Q) /CSM/VH/VHF1-D/VHF183Q.Seq.d/ 1172 0.0
VHB594 (VHB594Q) /CSM/VH/VHB5-D/VHB594Q.Seq.d/ 1164 0.0
VSF358 (VSF358Q) /CSM/VS/VSF3-C/VSF358Q.Seq.d/ 1126 0.0
VFB223 (VFB223Q) /CSM/VF/VFB2-A/VFB223Q.Seq.d/ 938 0.0
VFI141 (VFI141Q) /CSM/VF/VFI1-B/VFI141Q.Seq.d/ 809 0.0
FC-BF07 (FC-BF07Q) /CSM/FC/FC-BF/FC-BF07Q.Seq.d/ 805 0.0
VHM433 (VHM433Q) /CSM/VH/VHM4-B/VHM433Q.Seq.d/ 733 0.0
VHF769 (VHF769Q) /CSM/VH/VHF7-C/VHF769Q.Seq.d/ 716 0.0

own update 2002.12.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J01284|J01284.1 Slime mold (D.discoideum) discoidin-Ic gene, complete cds. 1172 0.0 1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1172 0.0 1
J01283|J01283.1 Slime mold (D.discoideum) discoidin-Ib gene, partial cds. 957 0.0 1
J01282|J01282.1 Slime mold (D.discoideum) discoidin-ia gene. 936 0.0 1
J01285|J01285.1 Slime mold (D.discoideum) discoidin-Id gene, 5' end. 831 0.0 2
J01281|J01281.1 Slime mold (D.discoideum) discoidin-i(5.6) gene, 3' end; (3' part of discoidin-ib or discoidin-id, not known which). 218 1e-52 1
X00327|X00327.1 Dictyostelim discoideum discoidin I pseudogene fragment with 139 bp of discoidin I homology. 194 2e-45 1
AB120175|AB120175.1 Dictyostelium discoideum DD7-1 mRNA for hypothetical protein, complete cds. 78 1e-33 6
X85121|X85121.1 Artificial sequences cloning vector DNA pDXD-3C. 86 1e-12 1
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 86 1e-12 1
dna update 2007.10.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P02887) RecName: Full=Discoidin-1 subunit B/C; AltName: Full=Di... 388 e-107
J01282_1(J01282|pid:none) Slime mold (D.discoideum) discoidin-ia... 363 3e-99
DLDOID(A03383) discoidin I chain D - slime mold (Dictyostelium d... 307 1e-82
AB120175_1(AB120175|pid:none) Dictyostelium discoideum DD7-1 mRN... 238 1e-61
(P42530) RecName: Full=Discoidin-2; AltName: Full=Discoidin II; ... 186 3e-46
J01281_1(J01281|pid:none) Slime mold (D.discoideum) discoidin-i(... 80 6e-14
AJ578435_1(AJ578435|pid:none) Paracentrotus lividus partial mRNA... 79 1e-13
AF070482_1(AF070482|pid:none) Lytechinus variegatus echinonectin... 77 3e-13
EU304328_129(EU304328|pid:none) Ostreococcus virus OsV5, complet... 75 1e-12
FN357340_20(FN357340|pid:none) Schistosoma mansoni genome sequen... 73 5e-12
protein update 2009. 7. 2
PSORT

psg: 0.71 gvh: 0.48 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: mitochondrial
16.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VHF183 is nuc

5' end seq. ID VHF183F
5' end seq.
>VHF183F.Seq
ATACAAATTATCTTTTTAAATAATAAAATTTATAAAATGTCTACCCAAGGTTTAGTTCAA
CTTATCTCAAATGCTCAATGTCATTTAAGAACCTCAACCAATTACAATGATGTCCACACT
CAATTTAATGCTGTTTTAAACTATAAAAACAAAGGTACCAATACTATTGATGGTTCAGAA
GCTTGGTGTTCATCAATCGTAGATACCAACCAATACATTGTTGCTGGTTGTGAAGTTCCA
CGTACTTTTATGTGTGTTGCTCTCCAAGGTCGTGGTGATCATGATCAATGGGTTACATCA
TACAAAATCCGTTATTCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCT
ATTACTGGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGA
GCTCGTTCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAA
TTCTACACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGC
GATAACTGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCANNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -