VHF181
Library VH
(Link to library)
Clone ID VHF181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHF181P
(Link to Original site)
Representative DNA sequence
>VHF181 (VHF181Q) /CSM/VH/VHF1-D/VHF181Q.Seq.d/
GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT
TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA
AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG
TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC
TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC
TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA
AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG
TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT
CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC
TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAGA
XXXXXXXXXXATGAATTAACTGCCTCCCCAANTTTTTTAGAACCAATTTACTTAGTAGAA
ATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTANTCAATCGTCGTANAGGT
ATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTA
CCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACANTGCCGGTCAAGNT
TTCCCACAATGTGTNTTCGATCANTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAA
GCCANTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGAT
CTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAA
sequence update 2002.10.25
Translated Amino Acid sequence
SAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSG
DMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSE
VTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEA
YLSFRRAIESVNVIVGNTE---

---ELTASPXFLEPIYLVEITAPENAIGGI*svxnrrxgivigeerrigspllsvkahlp
vlesfgftadlrshxagqxfpqcvfdxwasigvvnkdkkaxevalatrkrkglapeipdl
dkfhekl*ti*val*vf


Translated Amino Acid sequence (All Frames)
Frame A:
eckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*sfw
*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fqfr
snccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*rs
lslfp*sy*irqchcw*h*r---

---mn*lppqxf*nqft**kllpqktllvvfnlxsivvxvlllvknvvsvphyylskliy
qy*npsvspliyvptxpvkxshnvxsixglqlvlstkirkpxksl*pperekv*pqksqi
ltnstknskqfkshfefs

Frame B:
SAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSG
DMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSE
VTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEA
YLSFRRAIESVNVIVGNTE---

---*inclpxffrtnllsrnycprkrywwylicxqssxrycyw*rtsyrfpiiicqssft
sirilrfhr*ftfpxcrsxfptmcxrsxgfnwccqqr*esx*srfshqkekrfsprnprs
*qiprktlnnlsrtlsfq

Frame C:
vqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpikflv
i*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlisvqk
*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tlkkl
islsvellnpsmsllvtlk---

---ELTASPXFLEPIYLVEITAPENAIGGI*svxnrrxgivigeerrigspllsvkahlp
vlesfgftadlrshxagqxfpqcvfdxwasigvvnkdkkaxevalatrkrkglapeipdl
dkfhekl*ti*val*vf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 1164 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1164 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1164 0.0
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 1164 0.0
VHQ463 (VHQ463Q) /CSM/VH/VHQ4-C/VHQ463Q.Seq.d/ 1164 0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 1164 0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 1164 0.0
VHQ441 (VHQ441Q) /CSM/VH/VHQ4-B/VHQ441Q.Seq.d/ 1164 0.0
VHQ438 (VHQ438Q) /CSM/VH/VHQ4-B/VHQ438Q.Seq.d/ 1164 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1162 0.0 1
CX155337|CX155337.1 TfEST072F03 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 2e-33 4
CX154324|CX154324.1 TfEST033C12 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 3e-33 4
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 56 4e-33 9
CX154971|CX154971.1 TfEST089A07 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 7e-33 4
CX154356|CX154356.1 TfEST029E10 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 1e-32 4
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 2e-32 6
DY889811|DY889811.1 CeleSEQ6761 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6761, mRNA sequence. 84 4e-32 4
DY889772|DY889772.1 CeleSEQ11980 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11980, mRNA sequence. 84 5e-32 4
DY890935|DY890935.1 CeleSEQ7425 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ7425, mRNA sequence. 84 7e-32 4
dna update 2007.10.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 6e-69
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 2e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 256 7e-67
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 256 7e-67
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 256 9e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 256 1e-66
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 256 1e-66
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 254 4e-66
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 253 7e-66
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 253 7e-66
protein update 2009. 7. 2
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHF181 is cyt

5' end seq. ID VHF181F
5' end seq.
>VHF181F.Seq
GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT
TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA
AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG
TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC
TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC
TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA
AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG
TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT
CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC
TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAGA
NNNNNNNNNN
Length of 5' end seq. 610
3' end seq. ID VHF181Z
3' end seq.
>VHF181Z.Seq
NNNNNNNNNNATGAATTAACTGCCTCCCCAANTTTTTTAGAACCAATTTACTTAGTAGAA
ATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTANTCAATCGTCGTANAGGT
ATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTA
CCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACANTGCCGGTCAAGNT
TTCCCACAATGTGTNTTCGATCANTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAA
GCCANTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGAT
CTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAA
Length of 3' end seq. 416
Connected seq. ID VHF181P
Connected seq.
>VHF181P.Seq
GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT
TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA
AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG
TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC
TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC
TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA
AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG
TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT
CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC
TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAGA
----------ATGAATTAACTGCCTCCCCAANTTTTTTAGAACCAATTTACTTAGTAGAA
ATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTANTCAATCGTCGTANAGGT
ATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCATTTA
CCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACANTGCCGGTCAAGNT
TTCCCACAATGTGTNTTCGATCANTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAA
GCCANTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGAT
CTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAA
Length of connected seq. 1006
Full length Seq ID -
Full length Seq. -
Length of full length seq. -