VHF171
Library VH
(Link to library)
Clone ID VHF171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHF171P
(Link to Original site)
Representative DNA sequence
>VHF171 (VHF171Q) /CSM/VH/VHF1-C/VHF171Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGAXXXXXXXXXXTCTTTCGGTCCAGAAGGTAACGGTGCCAATNTCATCGTCAATG
TCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAAT
GGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTT
ATGATGTCACCNTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTG
CTCGTCGTGTANTATATGCTGATGAATTAACTGCCTCCCCAANTATCTTAGAACCAATCT
ACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTACTCAATC
GTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCA
AAGCTCATTTACCAGTATTAGAATCNTTCGGTTTCACCGATGATTTACGTTCCCACACTG
CCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACA
AAGATAAGAAAGCCNCTGAAGTCGCTTTAGCCACCAGAAAGAGAAAGGGTTTAGCCCCAG
AAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCATCTTGAG
TTTTCA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---SFGPEGNGANXIVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDV
TXHTDAIHRGGGQIIPTARRVXYADELTASPXILEPIYLVEITAPENAIGGI*svlnrrr
givigeerrigspllsvkahlpvlesfgftddlrshtagqafpqcvfdhwasigvvnkdk
kaxevalatrkrkglapeipdldkfhekl*ti*vas*vf


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlk---

---SFGPEGNGANXIVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDV
TXHTDAIHRGGGQIIPTARRVXYADELTASPXILEPIYLVEITAPENAIGGI*svlnrrr
givigeerrigspllsvkahlpvlesfgftddlrshtagqafpqcvfdhwasigvvnkdk
kaxevalatrkrkglapeipdldkfhekl*ti*vas*vf

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r---

---lsvqkvtvpxsssmspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmms
pstlmpstevvvkssqllvvxymlmn*lppqxs*nqst**kllpqktllvvfnlysivve
vlllvknvvsvphyylskliyqy*nxsvspmiyvptlpvklshnvssiiglqlvlstkir
kplksl*ppererv*pqksqiltnstknskqfkshlefs

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---frsrr*rcqxhrqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*ch
xph*chpqrwwsnhpncsscxic**inclpxylrtnllsrnycprkrywwylictqss*r
ycyw*rtsyrfpiiicqssftsirixrfhr*ftfphcrssfptmclrslgfnwccqqr*e
sx*srfshqkekgfsprnprs*qiprktlnnlsrilsf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF171 (VHF171Q) /CSM/VH/VHF1-C/VHF171Q.Seq.d/ 2375 0.0
VHE812 (VHE812Q) /CSM/VH/VHE8-A/VHE812Q.Seq.d/ 1215 0.0
VHE713 (VHE713Q) /CSM/VH/VHE7-A/VHE713Q.Seq.d/ 1215 0.0
VHF895 (VHF895Q) /CSM/VH/VHF8-D/VHF895Q.Seq.d/ 1213 0.0
VHE878 (VHE878Q) /CSM/VH/VHE8-D/VHE878Q.Seq.d/ 1213 0.0
VHF369 (VHF369Q) /CSM/VH/VHF3-C/VHF369Q.Seq.d/ 1211 0.0
VHF435 (VHF435Q) /CSM/VH/VHF4-B/VHF435Q.Seq.d/ 1207 0.0
VHF160 (VHF160Q) /CSM/VH/VHF1-C/VHF160Q.Seq.d/ 1207 0.0
VHF144 (VHF144Q) /CSM/VH/VHF1-B/VHF144Q.Seq.d/ 1207 0.0
VHE745 (VHE745Q) /CSM/VH/VHE7-B/VHE745Q.Seq.d/ 1207 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1162 0.0 1
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 72 8e-68 13
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 3e-67 9
Y09664|Y09664.1 C.albicans EFT2 gene. 78 7e-66 9
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 70 1e-61 10
AY144999|AY144999.1 Saccharomyces kluyveri clone Contig1706 EFT2 gene, complete cds. 78 3e-45 7
AF534908|AF534908.2 Tetrahymena thermophila elongation factor 2 gene, complete cds. 84 5e-45 6
AF107290|AF107290.1 Candida lusitaniae elongation factor 2 (EFT2) gene, partial cds. 64 6e-42 7
EH015431|EH015431.1 USDA-FP_188032 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt081_G08 5', mRNA sequence. 72 1e-41 5
AR550596|AR550596.1 Sequence 5727 from patent US 6747137. 78 5e-41 6
dna update 2007.10.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 8e-69
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 2e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 257 5e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 256 9e-67
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 256 9e-67
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 256 1e-66
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 256 2e-66
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 255 2e-66
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 254 4e-66
AK166595_1(AK166595|pid:none) Mus musculus morula whole body mor... 254 4e-66
protein update 2009. 7. 2
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHF171 is cyt

5' end seq. ID VHF171F
5' end seq.
>VHF171F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGANNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID VHF171Z
3' end seq.
>VHF171Z.Seq
NNNNNNNNNNTCTTTCGGTCCAGAAGGTAACGGTGCCAATNTCATCGTCAATGTCACCAA
AGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCAC
CAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGT
CACCNTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCG
TGTANTATATGCTGATGAATTAACTGCCTCCCCAANTATCTTAGAACCAATCTACTTAGT
AGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTACTCAATCGTCGTAG
AGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCAAAGCTCA
TTTACCAGTATTAGAATCNTTCGGTTTCACCGATGATTTACGTTCCCACACTGCCGGTCA
AGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAA
GAAAGCCNCTGAAGTCGCTTTAGCCACCAGAAAGAGAAAGGGTTTAGCCCCAGAAATCCC
AGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCATCTTGAGTTTTCA
Length of 3' end seq. 659
Connected seq. ID VHF171P
Connected seq.
>VHF171P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGA----------TCTTTCGGTCCAGAAGGTAACGGTGCCAATNTCATCGTCAATG
TCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAAT
GGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTT
ATGATGTCACCNTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTG
CTCGTCGTGTANTATATGCTGATGAATTAACTGCCTCCCCAANTATCTTAGAACCAATCT
ACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTAATCTGTACTCAATC
GTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTATCTGTCA
AAGCTCATTTACCAGTATTAGAATCNTTCGGTTTCACCGATGATTTACGTTCCCACACTG
CCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACA
AAGATAAGAAAGCCNCTGAAGTCGCTTTAGCCACCAGAAAGAGAAAGGGTTTAGCCCCAG
AAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCATCTTGAG
TTTTCA
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -