>VHF168 (VHF168Q) /CSM/VH/VHF1-C/VHF168Q.Seq.d/
AATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTAT
TTCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGT
CAACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATA
AACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAA
AGAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATG
GTGAGAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGAT
TCAAAACATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCAC
AACACATGTTGATGCGTGTCTCCATTGGTATCCATGGCGAAGACCTCGAATCTGCCATCA
ACACCTACAAACGTTTGTCTGAGAAATTGTTCACTCATGCCACACCAACTCTATTCAACG
CAGGTACACCATCACCACAAATGTCATCTTGTTTCTTGGTTCAAAXXXXXXXXXX

LNSDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHK
QTSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGF
KTLERSYLHRINGKIVERPQHMLMRVSIGIHGEDLESAINTYKRLSEKLFTHATPTLFNA
GTPSPQMSSCFLVQ---

Frame A:
n*iqi*liqlk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifi
nklqrvl*rqlrnnmnsliqraiywhhwsarssmks**nmvrdwrvsliiivisitisld
skhwnvpifivsmvklssvhntc*cvsplvsmaktsnlpstptnvclrncslmphqlyst
qvhhhhkchlvswf---


Frame B:
ikfrys*sn*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*
tnfkefcrds*eti*ih*skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwi
qnigtflsssyqw*ncrastthvdaclhwypwrrprichqhlqtfv*eivhschtnsiqr
rytittnvilflgs---


Frame C:
LNSDIVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHK
QTSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGF
KTLERSYLHRINGKIVERPQHMLMRVSIGIHGEDLESAINTYKRLSEKLFTHATPTLFNA
GTPSPQMSSCFLVQ---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF168 (VHF168Q) /CSM/VH/VHF1-C/VHF168Q.Seq.d/                       1160   0.0
CHJ148 (CHJ148Q) /CSM/CH/CHJ1-B/CHJ148Q.Seq.d/                       1136   0.0
VHK669 (VHK669Q) /CSM/VH/VHK6-C/VHK669Q.Seq.d/                       1126   0.0
SHB724 (SHB724Q) /CSM/SH/SHB7-A/SHB724Q.Seq.d/                       1061   0.0
CHF205 (CHF205Q) /CSM/CH/CHF2-A/CHF205Q.Seq.d/                       1057   0.0
VHD476 (VHD476Q) /CSM/VH/VHD4-D/VHD476Q.Seq.d/                       1037   0.0
AHJ408 (AHJ408Q) /CSM/AH/AHJ4-A/AHJ408Q.Seq.d/                        999   0.0
AHE563 (AHE563Q) /CSM/AH/AHE5-C/AHE563Q.Seq.d/                        997   0.0
AHD305 (AHD305Q) /CSM/AH/AHD3-A/AHD305Q.Seq.d/                        920   0.0
AHR370 (AHR370Q) /CSM/AH/AHR3-C/AHR370Q.Seq.d/                        916   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EK075939|EK075939.1 1092961035384 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061001980918 5', genomic survey sequence.    78   3e-10  1
EJ796540|EJ796540.1 1093017404545 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002781309 5', genomic survey sequence.    78   3e-10  1
Z19158|Z19158.1 Caenorhabditis elegans Cosmid T23G5.               58   4e-10  2
BJ755413|BJ755413.1 Caenorhabditis elegans cDNA clone:yk1413f02 : 5' end.    58   5e-10  2
BJ807707|BJ807707.1 Caenorhabditis elegans cDNA clone:yk1677a06 : 5' end.    58   5e-10  2
BJ112828|BJ112828.1 Caenorhabditis elegans cDNA clone:yk1160g04 : 5' end, single read.    58   5e-10  2
AU202763|AU202763.1 Caenorhabditis elegans cDNA clone:yk812d04 : 5' end, single read.    58   5e-10  2
BJ764261|BJ764261.1 Caenorhabditis elegans cDNA clone:yk1609c08 : 5' end.    58   5e-10  2
BJ800683|BJ800683.1 Caenorhabditis elegans cDNA clone:yk1440e10 : 5' end.    58   5e-10  2
BJ766478|BJ766478.1 Caenorhabditis elegans cDNA clone:yk1647b10 : 5' end.    58   5e-10  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   351   7e-96
S34807(S34807) ribonucleoside-diphosphate reductase (EC 1.17.4.1...   253   2e-66
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   245   8e-64
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   242   5e-63
CR382139_247(CR382139|pid:none) Debaryomyces hansenii strain CBS...   238   1e-61
AE016817_343(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...   234   1e-60
CU638744_79(CU638744|pid:none) Podospora anserina genomic DNA ch...   232   5e-60
CU207366_3423(CU207366|pid:none) Gramella forsetii KT0803 comple...   231   9e-60
AM437010_1(AM437010|pid:none) Vitis vinifera contig VV78X108426....   231   9e-60
CP001102_502(CP001102|pid:none) Candidatus Amoebophilus asiaticu...   231   1e-59

 psg: 0.75  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHF168 is cyt

>VHF168F.Seq
AATTAAATTCAGATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTAT
TTCCAGGTGTAAAGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGT
CAACACGTCATCCAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATA
AACAAACTTCAAAGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAA
AGAGCAATTTATTGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATG
GTGAGAGATTGGAGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGAT
TCAAAACATTGGAACGTTCCTATCTTCATCGTATCAATGGTAAAATTGTCGAGCGTCCAC
AACACATGTTGATGCGTGTCTCCATTGGTATCCATGGCGAAGACCTCGAATCTGCCATCA
ACACCTACAAACGTTTGTCTGAGAAATTGTTCACTCATGCCACACCAACTCTATTCAACG
CAGGTACACCATCACCACAAATGTCATCTTGTTTCTTGGTTCAAANNNNNNNNNN