VHF147 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHF147
Library	VH (Link to library)
Clone ID	VHF147 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11312-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHF1-B/VHF147Q.Seq.d/
Representative seq. ID	VHF147P (Link to Original site)
Representative DNA sequence	>VHF147 (VHF147Q) /CSM/VH/VHF1-B/VHF147Q.Seq.d/ ATTCACATATCGATAAAATATCTTGTGATTTGTATTGACTCGTGTTCAACAATAAACAGA AGAAAGATGTCAACATTAAAGAATAAAAAGCTAATACAAATAGAAGGGGAGATTGAAAAA GCAAGACAAGATAAAAATTGGAATGCTTTAACCGATTTAATTAGAAAATATAATAAATTA AATACAGATAATACAGTACCACTTGAATTATTAATAAATAGTGAGAAATATTTAACAGAA TTTGATTATAACAATGCATTGGCAACATTGAATAAAGCATATAATATAGCACCAAATAAT TCAGAAGTACTTTCATATTTAGGTATTGTTGAATATGAAAGAAATGATATAGTTAAAGCA TTATCATATCTTAATCGTTTAAATAATCCATATGGTAATAATGAAAATGGTAATGGTAAT GGTAATGGTAGTGGTAATGATATGATTTTAAATAATCGTAAAGTTGGTTTATTAATTCAA GCATTTACAATCAAAGGTAAATGTTATGAAAATCAAGGTAATCAACAAGATGCAATCACA AGTTATCAAAATGTTTATCAAATCACTTTTAAGTATTTTAAAAATTTTAAAACAATTGAT AAAXXXXXXXXXXAAGATATTGATGATTCAGTTAGTTTATCAAGAAATAGNCNATCTGGA CCAAGTAGTGTTGTATCATTTGATTTAAGATCAGGTACAACAGCTGGTGATAGTAGATCA CATAGATCTTATTCAATTAATAATGCAGAGATGGATTCAGCAATGAGAGACTTTGAAGAT AGTCTTACAAGTCCNAAAGATTTATTAAGAACTACNACNAATAGTAGTAGTAGTGGAGTA AATGGCGGTAATAGTGGTGGTGGTGGCAGTAGTGGTGGTCATTGTTTATCAAGTAAAGAA GTTCATAGAAATATTGCATTATGGTTATCATTAGCAGAAGCATTCNCTCAACAACGTATG TTTAAAGATGCGGCTCAATGTTTAGCACAAGCTGAATCAATCGATAATGATTCAGCCGAT GTTTATTATCATCAAGGTTATCTATTGGAAACTCAAGATTTAATGGGAAAAGCAATTGCA AACTATCATAAAGCTTTAACTATTGATTCAACTCATACAAATAGTTCAATTCGTTTAGNT CTTTATTACTTTAGAGAGAATGATTTATTATTAGCTGAAAATAATCTCNCTACNATCTTA CGTTCTAGTGATCCAACTTCACATCAAGCTTGGTTTCAATTAGGTTTAGTTTTAAAAGCT AAAGGTGAAATCGAACGTTCCTCTGATTGTTTTAAAAAGGCNATCGAATTGGATAGTACT TCTCCTTTAATTCCATACAGTCAAATCTCAAGATTGATTCTAAA
sequence update	2002.10.25
Translated Amino Acid sequence	IHISIKYLVICIDSCSTINRRKMSTLKNKKLIQIEGEIEKARQDKNWNALTDLIRKYNKL NTDNTVPLELLINSEKYLTEFDYNNALATLNKAYNIAPNNSEVLSYLGIVEYERNDIVKA LSYLNRLNNPYGNNENGNGNGNGSGNDMILNNRKVGLLIQAFTIKGKCYENQGNQQDAIT SYQNVYQITFKYFKNFKTIDK--- ---DIDDSVSLSRNXXSGPSSVVSFDLRSGTTAGDSRSHRSYSINNAEMDSAMRDFEDSL TSPKDLLRTTTNSSSSGVNGGNSGGGGSSGGHCLSSKEVHRNIALWLSLAEAFXQQRMFK DAAQCLAQAESIDNDSADVYYHQGYLLETQDLMGKAIANYHKALTIDSTHTNSSIRLXLY YFRENDLLLAENNLXTILRSSDPTSHQAWFQLGLVLKAKGEIERSSDCFKKAIELDSTSP LIPYSQISRLIL
Translated Amino Acid sequence (All Frames)	Frame A: IHISIKYLVICIDSCSTINRRKMSTLKNKKLIQIEGEIEKARQDKNWNALTDLIRKYNKL NTDNTVPLELLINSEKYLTEFDYNNALATLNKAYNIAPNNSEVLSYLGIVEYERNDIVKA LSYLNRLNNPYGNNENGNGNGNGSGNDMILNNRKVGLLIQAFTIKGKCYENQGNQQDAIT SYQNVYQITFKYFKNFKTIDK--- ---kilmiqlvyqeixxldqvvlyhlidqvqqlvivdhidliqlimqrwiqqetlkiv lqvxkiyelxxivvvvemavivvvvavvvvivyqvkkfieilhygyhqkhslnnvcl kmrlnvhklnqsimiqpmfiiikviywklkiwekqlqtiikllliqliqivqfvxf itlermiyylkiislxsyvlviqlhiklgfnvfklkvksnvplivlkrxsnwivll lfhtvksqdf Frame B: ftyrnilfvltrvqqteercqhriksykkgrlkkqdkikigmlpileniin* iqiiqyhlny*ivrniqnliitmhwqhikhiihqiiqkyfhivllnmkemilkh yhiliviihmvimkmvmvmvmvvvmifiivklvyfkhlqskvnvmkikvinkmqsq vikmfiksllsilkilkqli--- ---ry*fsfikkxiwtkcciifkirynsw*itilfn*crdgfsnerlrs yksxrfiknyxx*wskwrwwwwqwwslfikrsskycimviisrsixsttyv rcgsmfstsinrfsrcllssrlsignsrfngksncklssfnyfnsykfnsfxsl llrefiisksxyxltf*snftsslvsirfsfksrnrtfllfkgxrigyfs fnsiqsnlkidsk Frame C: shidkiscdlylvfnnkqkkdvnikekantnrrgdksktrklecfnrfnkiik yrysttiinkeifnrilqcigniesiystkfrstfifrycikkyssi iissfksiw**kwwwwwydfksswfinssiynqrmlksrstrcnhk lskclsnhfvfkfnn*--- ---DIDDSVSLSRNXXSGPSSVVSFDLRSGTTAGDSRSHRSYSINNAEMDSAMRDFEDSL TSPKDLLRTTTNSSSSGVNGGNSGGGGSSGGHCLSSKEVHRNIALWLSLAEAFXQQRMFK DAAQCLAQAESIDNDSADVYYHQGYLLETQDLMGKAIANYHKALTIDSTHTNSSIRLXLY YFRENDLLLAENNLXTILRSSDPTSHQAWFQLGLVLKAKGEIERSSDCFKKAIELDSTSP LIPYSQISRLIL
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHF147 (VHF147Q) /CSM/VH/VHF1-B/VHF147Q.Seq.d/ 1715 0.0 CHR104 (CHR104Q) /CSM/CH/CHR1-A/CHR104Q.Seq.d/ 1407 0.0 CHF888 (CHF888Q) /CSM/CH/CHF8-D/CHF888Q.Seq.d/ 1407 0.0 AHQ419 (AHQ419Q) /CSM/AH/AHQ4-A/AHQ419Q.Seq.d/ 1407 0.0 AHL167 (AHL167Q) /CSM/AH/AHL1-C/AHL167Q.Seq.d/ 1403 0.0 AHO863 (AHO863Q) /CSM/AH/AHO8-C/AHO863Q.Seq.d/ 1364 0.0 VHN261 (VHN261Q) /CSM/VH/VHN2-C/VHN261Q.Seq.d/ 1356 0.0 CHQ122 (CHQ122Q) /CSM/CH/CHQ1-A/CHQ122Q.Seq.d/ 1352 0.0 SHL618 (SHL618Q) /CSM/SH/SHL6-A/SHL618Q.Seq.d/ 1350 0.0 AHQ761 (AHQ761Q) /CSM/AH/AHQ7-C/AHQ761Q.Seq.d/ 1336 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY039799\|AY039799.1 Chlamydomonas raudensis cytochrome f precursor (petA) gene, complete cds; and cytochrome b/f complex subunit IV (petD) gene, partial cds; chloroplast. 38 0.010 3 AC078976\|AC078976.5 Homo sapiens BAC clone RP11-403L5 from 2, complete sequence. 44 0.026 2 CP000263\|CP000263.1 Buchnera aphidicola str. Cc (Cinara cedri), complete genome. 38 0.033 14 AP007888\|AP007888.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjB70O07, BM1196. 52 0.046 1 AP007507\|AP007507.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT37G03, TM0675. 52 0.046 1 AP007369\|AP007369.1 Lotus japonicus genomic DNA, chromosome 3, clone:LjT12O20, TM0460. 52 0.046 1 AP007604\|AP007604.1 Lotus japonicus genomic DNA, chromosome 2, clone:LjT44B19, TM0808. 50 0.11 2 AP008158\|AP008158.1 Lotus japonicus genomic DNA, chromosome 3, clone:LjT05I24, TM1570. 50 0.18 1 AP007901\|AP007901.1 Lotus japonicus genomic DNA, chromosome 3, clone:LjT27C23, TM1212. 50 0.18 1 AP007893\|AP007893.1 Lotus japonicus genomic DNA, clone:LjT07C14, TM1201. 50 0.18 1
dna update	2007.10.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AP008209_648(AP008209\|pid:none) Oryza sativa (japonica cultivar-... 79 3e-13 BC111487_1(BC111487\|pid:none) Homo sapiens tetratricopeptide rep... 78 9e-13 BC114365_1(BC114365\|pid:none) Homo sapiens tetratricopeptide rep... 78 9e-13 AL834383_1(AL834383\|pid:none) Homo sapiens mRNA; cDNA DKFZp434B0... 78 9e-13 AB032966_1(AB032966\|pid:none) Homo sapiens mRNA for KIAA1140 pro... 78 9e-13 BC027457_1(BC027457\|pid:none) Homo sapiens tetratricopeptide rep... 78 9e-13 BC035708_1(BC035708\|pid:none) Homo sapiens tetratricopeptide rep... 78 9e-13 AK056464_1(AK056464\|pid:none) Homo sapiens cDNA FLJ31902 fis, cl... 78 9e-13 BC098811_1(BC098811\|pid:none) Rattus norvegicus tetratricopeptid... 77 1e-12 AK165244_1(AK165244\|pid:none) Mus musculus 6 days neonate spleen... 77 1e-12
protein update	2009. 7. 2
PSORT	psg: 0.80 gvh: 0.48 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 36.0 %: mitochondrial 16.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: endoplasmic reticulum >> prediction for VHF147 is nuc
5' end seq. ID	VHF147F
5' end seq.	>VHF147F.Seq ATTCACATATCGATAAAATATCTTGTGATTTGTATTGACTCGTGTTCAACAATAAACAGA AGAAAGATGTCAACATTAAAGAATAAAAAGCTAATACAAATAGAAGGGGAGATTGAAAAA GCAAGACAAGATAAAAATTGGAATGCTTTAACCGATTTAATTAGAAAATATAATAAATTA AATACAGATAATACAGTACCACTTGAATTATTAATAAATAGTGAGAAATATTTAACAGAA TTTGATTATAACAATGCATTGGCAACATTGAATAAAGCATATAATATAGCACCAAATAAT TCAGAAGTACTTTCATATTTAGGTATTGTTGAATATGAAAGAAATGATATAGTTAAAGCA TTATCATATCTTAATCGTTTAAATAATCCATATGGTAATAATGAAAATGGTAATGGTAAT GGTAATGGTAGTGGTAATGATATGATTTTAAATAATCGTAAAGTTGGTTTATTAATTCAA GCATTTACAATCAAAGGTAAATGTTATGAAAATCAAGGTAATCAACAAGATGCAATCACA AGTTATCAAAATGTTTATCAAATCACTTTTAAGTATTTTAAAAATTTTAAAACAATTGAT AAANNNNNNNNNN
Length of 5' end seq.	613
3' end seq. ID	VHF147Z
3' end seq.	>VHF147Z.Seq NNNNNNNNNNAAGATATTGATGATTCAGTTAGTTTATCAAGAAATAGNCNATCTGGACCA AGTAGTGTTGTATCATTTGATTTAAGATCAGGTACAACAGCTGGTGATAGTAGATCACAT AGATCTTATTCAATTAATAATGCAGAGATGGATTCAGCAATGAGAGACTTTGAAGATAGT CTTACAAGTCCNAAAGATTTATTAAGAACTACNACNAATAGTAGTAGTAGTGGAGTAAAT GGCGGTAATAGTGGTGGTGGTGGCAGTAGTGGTGGTCATTGTTTATCAAGTAAAGAAGTT CATAGAAATATTGCATTATGGTTATCATTAGCAGAAGCATTCNCTCAACAACGTATGTTT AAAGATGCGGCTCAATGTTTAGCACAAGCTGAATCAATCGATAATGATTCAGCCGATGTT TATTATCATCAAGGTTATCTATTGGAAACTCAAGATTTAATGGGAAAAGCAATTGCAAAC TATCATAAAGCTTTAACTATTGATTCAACTCATACAAATAGTTCAATTCGTTTAGNTCTT TATTACTTTAGAGAGAATGATTTATTATTAGCTGAAAATAATCTCNCTACNATCTTACGT TCTAGTGATCCAACTTCACATCAAGCTTGGTTTCAATTAGGTTTAGTTTTAAAAGCTAAA GGTGAAATCGAACGTTCCTCTGATTGTTTTAAAAAGGCNATCGAATTGGATAGTACTTCT CCTTTAATTCCATACAGTCAAATCTCAAGATTGATTCTAAA
Length of 3' end seq.	761
Connected seq. ID	VHF147P
Connected seq.	>VHF147P.Seq ATTCACATATCGATAAAATATCTTGTGATTTGTATTGACTCGTGTTCAACAATAAACAGA AGAAAGATGTCAACATTAAAGAATAAAAAGCTAATACAAATAGAAGGGGAGATTGAAAAA GCAAGACAAGATAAAAATTGGAATGCTTTAACCGATTTAATTAGAAAATATAATAAATTA AATACAGATAATACAGTACCACTTGAATTATTAATAAATAGTGAGAAATATTTAACAGAA TTTGATTATAACAATGCATTGGCAACATTGAATAAAGCATATAATATAGCACCAAATAAT TCAGAAGTACTTTCATATTTAGGTATTGTTGAATATGAAAGAAATGATATAGTTAAAGCA TTATCATATCTTAATCGTTTAAATAATCCATATGGTAATAATGAAAATGGTAATGGTAAT GGTAATGGTAGTGGTAATGATATGATTTTAAATAATCGTAAAGTTGGTTTATTAATTCAA GCATTTACAATCAAAGGTAAATGTTATGAAAATCAAGGTAATCAACAAGATGCAATCACA AGTTATCAAAATGTTTATCAAATCACTTTTAAGTATTTTAAAAATTTTAAAACAATTGAT AAA----------AAGATATTGATGATTCAGTTAGTTTATCAAGAAATAGNCNATCTGGA CCAAGTAGTGTTGTATCATTTGATTTAAGATCAGGTACAACAGCTGGTGATAGTAGATCA CATAGATCTTATTCAATTAATAATGCAGAGATGGATTCAGCAATGAGAGACTTTGAAGAT AGTCTTACAAGTCCNAAAGATTTATTAAGAACTACNACNAATAGTAGTAGTAGTGGAGTA AATGGCGGTAATAGTGGTGGTGGTGGCAGTAGTGGTGGTCATTGTTTATCAAGTAAAGAA GTTCATAGAAATATTGCATTATGGTTATCATTAGCAGAAGCATTCNCTCAACAACGTATG TTTAAAGATGCGGCTCAATGTTTAGCACAAGCTGAATCAATCGATAATGATTCAGCCGAT GTTTATTATCATCAAGGTTATCTATTGGAAACTCAAGATTTAATGGGAAAAGCAATTGCA AACTATCATAAAGCTTTAACTATTGATTCAACTCATACAAATAGTTCAATTCGTTTAGNT CTTTATTACTTTAGAGAGAATGATTTATTATTAGCTGAAAATAATCTCNCTACNATCTTA CGTTCTAGTGATCCAACTTCACATCAAGCTTGGTTTCAATTAGGTTTAGTTTTAAAAGCT AAAGGTGAAATCGAACGTTCCTCTGATTGTTTTAAAAAGGCNATCGAATTGGATAGTACT TCTCCTTTAATTCCATACAGTCAAATCTCAAGATTGATTCTAAA
Length of connected seq.	1354
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas