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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHF141
Library VH
(Link to library)
Clone ID VHF141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11747-1
Original site URL
Representative seq. ID VHF141P
(Link to Original site)
Representative DNA sequence 
>VHF141 (VHF141Q) /CSM/VH/VHF1-B/VHF141Q.Seq.d/
GCCTACTGGAAAAAAAAATTATTAAAACAATTTATAAATTAATTAACTTTTAAATCTATT
AACACTCAAACTACTTTTTTTTATAAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAA
AAATAATAAATTAAAAAAATAAAAAAAATACTCATTATAAATTATTAAAATATACAATTT
AAACCAAAAAAAAAAXXXXXXXXXXTTACTNTCTTTCCAATTCNTTTTGGATTGCATGGA
ATTTAGATCTTCAAAACTTTTAATTCAATCTGCTCAAACCGTTAGTAAGAATTATAAAAA
ATCAAAAGAATCATTCACAGCATGGAATCAATCTTTAGAGATTTTAATTCATTTGGNTAA
AGCTCACACTGAAACTATCATCNTTCAAAAGTTTATTGAAAAAATTCAATCTGAAAAGGA
TCTCGAATTGGCTTCCATCNTAAAGAAACTTTGCCAACTCTATGGTCTTTACATCATTAG
AGAGGATTTCGAATTCTTTAG
sequence update 2002.10.25
Translated Amino Acid sequence 
ptgkkny*nnl*in*llnlltlkllffikk*knkkikk*knnklkk*kkysl*IIKIYNL
NQKK---

---LLSFQFXLDCMEFRSSKLLIQSAQTVSKNYKKSKESFTAWNQSLEILIHLXKAHTET
IIXQKFIEKIQSEKDLELASIXKKLCQLYGLYIIREDFEFF
Translated Amino Acid sequence (All Frames) 
Frame A:
aywkkkllkqfin*ltfksintqttffykkikk*knkkikk**ikkikkiliiny*niqf
kpkkk---

---LLSFQFXLDCMEFRSSKLLIQSAQTVSKNYKKSKESFTAWNQSLEILIHLXKAHTET
IIXQKFIEKIQSEKDLELASIXKKLCQLYGLYIIREDFEFF

Frame B:
ptgkkny*nnl*in*llnlltlkllffikk*knkkikk*knnklkk*kkysl*IIKIYNL
NQKK---

---yxlsnsfwiawnldlqnf*fnllkplvriiknqknhsqhginl*rf*fiwxkltlkl
ssfksllkkfnlkrisnwlps*rnfansmvftslerisnsl

Frame C:
llekkiiktiyklinf*iy*hsnyffl*knkkikk*knkkiin*knkknthykllkyti*
tkkk---

---txfpixfglhgi*ifktfnsicsnr**el*kikriihsmesifrdfnsfg*ssh*ny
hxskvy*knsi*kgsrigfhxketlptlwslhh*rgfril*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHF141 (VHF141Q) /CSM/VH/VHF1-B/VHF141Q.Seq.d/                        557   e-158
CHO517 (CHO517Q) /CSM/CH/CHO5-A/CHO517Q.Seq.d/                        557   e-158
CHG686 (CHG686Q) /CSM/CH/CHG6-D/CHG686Q.Seq.d/                        557   e-158
AHO723 (AHO723Q) /CSM/AH/AHO7-A/AHO723Q.Seq.d/                        551   e-156
SHD580 (SHD580Q) /CSM/SH/SHD5-D/SHD580Q.Seq.d/                        545   e-154
SSJ150 (SSJ150Q) /CSM/SS/SSJ1-C/SSJ150Q.Seq.d/                         36   0.49
SSA713 (SSA713Q) /CSM/SS/SSA7-A/SSA713Q.Seq.d/                         36   0.49
FC-BK03 (FC-BK03Q) /CSM/FC/FC-BK/FC-BK03Q.Seq.d/                       36   0.49
FC-AW18 (FC-AW18Q) /CSM/FC/FC-AW/FC-AW18Q.Seq.d/                       36   0.49
AHM753 (AHM753Q) /CSM/AH/AHM7-C/AHM753Q.Seq.d/                         36   0.49
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

ER292013|ER292013.1 1092343609731 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061001487338 3', genomic survey sequence.    56   0.001  1
AL353696|AL353696.8 Human DNA sequence from clone RP11-560G8 on chromosome 9.    48   0.23   3
AW829533|AW829533.1 ra41c11.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to contains element MER33 repetitive element ;, mRNA sequence.    32   0.74   2
AW830038|AW830038.1 ra48h04.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to contains element MER33 repetitive element ;, mRNA sequence.    32   0.74   2
EK566450|EK566450.1 1095521043653 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005927863 3', genomic survey sequence.    46   1.0    1
EJ410140|EJ410140.1 1093012133019 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002288315 3', genomic survey sequence.    46   1.0    1
DT768487|DT768487.1 EST1202336 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1ZR44, mRNA sequence.    34   2.7    2
DN291769|DN291769.1 PL030008B10C12 cDNA from sexually mature hermaphodites Schmidtea mediterranea cDNA 5', mRNA sequence.    44   4.0    1
BU495878|BU495878.1 PfESToab78h08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    44   4.0    1
CU442734|CU442734.2 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH242-168D13.    44   4.0    1
dna update 2007.10.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF051203_1(AF051203|pid:none) Picea mariana acyl-CoA oxidase hom...    65   1e-09
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...    60   3e-08
U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...    60   3e-08
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...    58   1e-07
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...    58   1e-07
AK317051_1(AK317051|pid:none) Arabidopsis thaliana AT5G65110 mRN...    58   1e-07
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...    58   1e-07
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...    55   7e-07
AX155021_1(AX155021|pid:none) Sequence 67 from Patent WO0138484.       53   5e-06
AP011115_1718(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    47   3e-04
protein update 2009. 7. 2
PSORT 

 psg: 0.88  gvh: 0.45  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal

>> prediction for VHF141 is cyt
5' end seq. ID VHF141F
5' end seq. 
>VHF141F.Seq
GCCTACTGGAAAAAAAAATTATTAAAACAATTTATAAATTAATTAACTTTTAAATCTATT
AACACTCAAACTACTTTTTTTTATAAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAA
AAATAATAAATTAAAAAAATAAAAAAAATACTCATTATAAATTATTAAAATATACAATTT
AAACCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 205
3' end seq. ID VHF141Z
3' end seq. 
>VHF141Z.Seq
NNNNNNNNNNTTACTNTCTTTCCAATTCNTTTTGGATTGCATGGAATTTAGATCTTCAAA
ACTTTTAATTCAATCTGCTCAAACCGTTAGTAAGAATTATAAAAAATCAAAAGAATCATT
CACAGCATGGAATCAATCTTTAGAGATTTTAATTCATTTGGNTAAAGCTCACACTGAAAC
TATCATCNTTCAAAAGTTTATTGAAAAAATTCAATCTGAAAAGGATCTCGAATTGGCTTC
CATCNTAAAGAAACTTTGCCAACTCTATGGTCTTTACATCATTAGAGAGGATTTCGAATT
CTTTAG
Length of 3' end seq. 306
Connected seq. ID VHF141P
Connected seq. 
>VHF141P.Seq
GCCTACTGGAAAAAAAAATTATTAAAACAATTTATAAATTAATTAACTTTTAAATCTATT
AACACTCAAACTACTTTTTTTTATAAAAAAATAAAAAAATAAAAAAATAAAAAAATAAAA
AAATAATAAATTAAAAAAATAAAAAAAATACTCATTATAAATTATTAAAATATACAATTT
AAACCAAAAAAAAAA----------TTACTNTCTTTCCAATTCNTTTTGGATTGCATGGA
ATTTAGATCTTCAAAACTTTTAATTCAATCTGCTCAAACCGTTAGTAAGAATTATAAAAA
ATCAAAAGAATCATTCACAGCATGGAATCAATCTTTAGAGATTTTAATTCATTTGGNTAA
AGCTCACACTGAAACTATCATCNTTCAAAAGTTTATTGAAAAAATTCAATCTGAAAAGGA
TCTCGAATTGGCTTCCATCNTAAAGAAACTTTGCCAACTCTATGGTCTTTACATCATTAG
AGAGGATTTCGAATTCTTTAG
Length of connected seq. 491
Full length Seq ID -
Full length Seq. -
Length of full length seq. -