VHF106
Library VH
(Link to library)
Clone ID VHF106
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16508-1
Original site URL
Representative seq. ID VHF106P
(Link to Original site)
Representative DNA sequence
>VHF106 (VHF106Q) /CSM/VH/VHF1-A/VHF106Q.Seq.d/
TTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGTTTAGAGAATAAGCAAATGGAGT
TCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAAGTTTTCACATCAGTACTACGTG
CAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAAGGTGATGACCCAATTCAAGATG
ACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCTGAACAGTTCACTCAAGTGGCAC
TTGAATATGCAACTCATTATCGTACCAATAATGTACTAATTCCATTTGGTTGTGATTTCG
CTTACCTTAACGCTCAAATGTATTACAAAACATTGACAAACTAATCGCACATATCAATTC
AAATCCGGATAAATATGGTTTAAATTTGTTATATTCAACTCCATCAATTTATATAGATGC
TGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACTGATGATCTCTTCCCATATGCTGA
TAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGTCGTCCAGCATTGAAAGGCTACGT
TCGTCAAAATAATGCTCTATTACATGTAGTTGAACAAATGTTGGTAACTAGTAGTAATCT
TATGCCAAGTAGTAGATCTGAACAATTGGTTGATGACATTGTTAXXXXXXXXXXCCGTGG
TTCACCCAACCAGTGGTAATTATGTACNTGTGAATGCTATTGCNTACATTCAAGATCNTA
ATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAG
ATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTG
GTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATA
TTTCAAGTTATGCTCAATCTCATTATCGTCNTGCTGCACTNTCTTTATCACATCCATTAC
TCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTG
TTTACTCACCATTGACTTCAGCNTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTAC
AATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTG
ATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAA
CAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATT
TATCAAGATTAAAATGGAAAACTGTTGATGGTAAAAACTAGGATCATAAATCATCATCAT
CAACTAAAGAAGATTCTTCAAAGGTTTTGTTTTTACTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
yrsyglsryrssfre*angvhveidpkytressfhisttcnvlysrwfql*ar**pnsr*
pkfir**rrlks*tvhssgt*icnslsyq*ctnsiwl*frlp*RSNVLQNIDKLIAHINS
NPDKYGLNLLYSTPSIYIDAVNDANLVWEVKTDDLFPYADNEFSYWTGYFVSRPALKGYV
RQNNALLHVVEQMLVTSSNLMPSSRSEQLVDDIV---

---VVHPTSGNYVXVNAIAYIQDXNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDD
GRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRXAALSLSHPLLPMFTTTQQSSNDWNS
QYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLS
TIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGKN*dhksssstkedsskvlfll


Translated Amino Acid sequence (All Frames)
Frame A:
lsvvwiikisklv*riskwsscgdrpkvhqrikfshqyyvqcivlqmvstlskvmtqfkm
tqiysiit*tqelnsslkwhlnmqliivpimy*fhlvvisltltlkcitkh*qtnrtyqf
ksg*iwfkfvifnsinlyrcck*cqssmgsen**slpic***i*lldwlfr*sssierlr
ssk*csitcs*tnvgn***syak**i*tig**hc---

---pwftqpvvimyx*mllxtfkixinhynsplslievvdvhr*emvnwi**civvl*km
mvvvlvnq*msqlkslqlvn*fsmifqvmlnliivxlhxlyhihysqclqplnnlqtigi
lnikvfthh*lqxhlyqmv*rfklyng*iikiipyfyvlkifiklmvkihkihklsl*if
qlsfqqlqsllqlk*i*lvfknyqiyqd*ngkllmvktriinhhhqlkkilqrfcfyf

Frame B:
yrsyglsryrssfre*angvhveidpkytressfhisttcnvlysrwfql*ar**pnsr*
pkfir**rrlks*tvhssgt*icnslsyq*ctnsiwl*frlp*RSNVLQNIDKLIAHINS
NPDKYGLNLLYSTPSIYIDAVNDANLVWEVKTDDLFPYADNEFSYWTGYFVSRPALKGYV
RQNNALLHVVEQMLVTSSNLMPSSRSEQLVDDIV---

---rgspnqw*lctcecycxhsrs*siitihhch**kswmcivkrwsigyddassyfer*
wswcwstne*vnsnryn**idfp*yfklcsislsscctxfitsitpnvynhstifkrlef
sisrclltidfsxtftkwfkdsnstmvr*sr*yhtfty*kylsn*wsrftrstnyhfrsf
nylfnnynhfcn*nefnwcskiikfikikmenc*w*klgs*iiiin*rrffkgfvftf

Frame C:
igrmdyqdiearlenkqmefmwrstqstpenqvftsvlramyctpdgfnfeqgddpiqdd
pnlfdnnvdsraeqftqvaleyathyrtnnvlipfgcdfaylnaqmyyktltn*shisiq
irinmv*icyiqlhqfi*ml*mmpi*ygk*klmisshmlimnlviglvislvvqh*katf
vkimlyym*lnkcw*lvvilcqvvdlnnwlmtll---

---VVHPTSGNYVXVNAIAYIQDXNQSLQFTIVTDRSRGCASLRDGQLDMMMHRRTLKDD
GRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRXAALSLSHPLLPMFTTTQQSSNDWNS
QYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENIYQIDGQDSQDPQTITLDLS
TIFSTITITSATEMNLTGVQKLSNLSRLKWKTVDGKN*dhksssstkedsskvlfll

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHF106 (VHF106Q) /CSM/VH/VHF1-A/VHF106Q.Seq.d/ 2601 0.0
SHK115 (SHK115Q) /CSM/SH/SHK1-A/SHK115Q.Seq.d/ 1356 0.0
VHD387 (VHD387Q) /CSM/VH/VHD3-D/VHD387Q.Seq.d/ 1354 0.0
VHQ387 (VHQ387Q) /CSM/VH/VHQ3-D/VHQ387Q.Seq.d/ 1350 0.0
VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/ 1348 0.0
VHP767 (VHP767Q) /CSM/VH/VHP7-C/VHP767Q.Seq.d/ 1348 0.0
VHP443 (VHP443Q) /CSM/VH/VHP4-B/VHP443Q.Seq.d/ 1348 0.0
VHP436 (VHP436Q) /CSM/VH/VHP4-B/VHP436Q.Seq.d/ 1348 0.0
VHO643 (VHO643Q) /CSM/VH/VHO6-B/VHO643Q.Seq.d/ 1348 0.0
VHN718 (VHN718Q) /CSM/VH/VHN7-A/VHN718Q.Seq.d/ 1348 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds. 1281 0.0 2
AM569193|AM569193.1 Paracentrotus lividus EST, clone MPMGp1173O11114Q, 5' end. 50 0.18 1
AA382162|AA382162.1 EST95325 Activated T-cells II Homo sapiens cDNA 5' end, mRNA sequence. 40 0.35 3
CE529546|CE529546.1 tigr-gss-dog-17000365859317 Dog Library Canis familiaris genomic, genomic survey sequence. 48 0.71 1
AM379990|AM379990.1 Oryzias latipes EST, clone FOE002-P00123-DPE-R_C22. 46 2.8 1
EG619833|EG619833.1 EMBRYOF088227O8 POSSUM_01-POSSUM-C-EMBRYO-2KB Trichosurus vulpecula cDNA clone 1061028989863, mRNA sequence. 46 2.8 1
AC148817|AC148817.3 Medicago truncatula chromosome 7 clone mth2-22c10, complete sequence. 32 5.3 2
DY816594|DY816594.1 CTOX5192.b1_O02.ab1 CTO(XYZ) dandelion Taraxacum officinale cDNA clone CTOX5192, mRNA sequence. 32 7.0 2
AM025232|AM025232.1 Bos indicus 3' EST, clone C0005915l21. 34 7.0 2
BV311944|BV311944.1 S236P6300RE7.T0 AlaskanMalamute Canis familiaris STS genomic, sequence tagged site. 34 7.9 2
dna update 2007. 9. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34098) RecName: Full=Lysosomal alpha-mannosidase; Sho... 357 e-117
M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi... 353 e-117
BC091843_1(BC091843|pid:none) Danio rerio zgc:110815, mRNA (cDNA... 98 7e-41
BC121882_1(BC121882|pid:none) Xenopus tropicalis lysosomal alpha... 91 2e-36
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20... 90 6e-36
AE014134_1973(AE014134|pid:none) Drosophila melanogaster chromos... 90 2e-35
AY119107_1(AY119107|pid:none) Drosophila melanogaster RE08556 fu... 91 1e-34
AE014134_1633(AE014134|pid:none) Drosophila melanogaster chromos... 91 1e-34
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,... 87 3e-34
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,... 91 1e-32
protein update 2009. 7. 2
PSORT

psg: 0.74 gvh: 0.38 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
24.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VHF106 is nuc

5' end seq. ID VHF106F
5' end seq.
>VHF106F.Seq
TTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGTTTAGAGAATAAGCAAATGGAGT
TCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAAGTTTTCACATCAGTACTACGTG
CAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAAGGTGATGACCCAATTCAAGATG
ACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCTGAACAGTTCACTCAAGTGGCAC
TTGAATATGCAACTCATTATCGTACCAATAATGTACTAATTCCATTTGGTTGTGATTTCG
CTTACCTTAACGCTCAAATGTATTACAAAACATTGACAAACTAATCGCACATATCAATTC
AAATCCGGATAAATATGGTTTAAATTTGTTATATTCAACTCCATCAATTTATATAGATGC
TGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACTGATGATCTCTTCCCATATGCTGA
TAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGTCGTCCAGCATTGAAAGGCTACGT
TCGTCAAAATAATGCTCTATTACATGTAGTTGAACAAATGTTGGTAACTAGTAGTAATCT
TATGCCAAGTAGTAGATCTGAACAATTGGTTGATGACATTGTTANNNNNNNNNN
Length of 5' end seq. 654
3' end seq. ID VHF106Z
3' end seq.
>VHF106Z.Seq
NNNNNNNNNNCCGTGGTTCACCCAACCAGTGGTAATTATGTACNTGTGAATGCTATTGCN
TACATTCAAGATCNTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGA
TGTGCATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGAT
GATGGTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAA
TTGATTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCNTGCTGCACTNTCT
TTATCACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAAT
TCTCAATATCAAGGTGTTTACTCACCATTGACTTCAGCNTCACCTTTACCAAATGGTTTA
AAGATTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAA
AATATTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTT
TCAACTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTT
CAAAAATTATCAAATTTATCAAGATTAAAATGGAAAACTGTTGATGGTAAAAACTAGGAT
CATAAATCATCATCATCAACTAAAGAAGATTCTTCAAAGGTTTTGTTTTTACTTTT
Length of 3' end seq. 716
Connected seq. ID VHF106P
Connected seq.
>VHF106P.Seq
TTATCGGTCGTATGGATTATCAAGATATCGAAGCTCGTTTAGAGAATAAGCAAATGGAGT
TCATGTGGAGATCGACCCAAAGTACACCAGAGAATCAAGTTTTCACATCAGTACTACGTG
CAATGTATTGTACTCCAGATGGTTTCAACTTTGAGCAAGGTGATGACCCAATTCAAGATG
ACCCAAATTTATTCGATAATAACGTAGACTCAAGAGCTGAACAGTTCACTCAAGTGGCAC
TTGAATATGCAACTCATTATCGTACCAATAATGTACTAATTCCATTTGGTTGTGATTTCG
CTTACCTTAACGCTCAAATGTATTACAAAACATTGACAAACTAATCGCACATATCAATTC
AAATCCGGATAAATATGGTTTAAATTTGTTATATTCAACTCCATCAATTTATATAGATGC
TGTAAATGATGCCAATCTAGTATGGGAAGTGAAAACTGATGATCTCTTCCCATATGCTGA
TAATGAATTTAGTTATTGGACTGGTTATTTCGTTAGTCGTCCAGCATTGAAAGGCTACGT
TCGTCAAAATAATGCTCTATTACATGTAGTTGAACAAATGTTGGTAACTAGTAGTAATCT
TATGCCAAGTAGTAGATCTGAACAATTGGTTGATGACATTGTTA----------CCGTGG
TTCACCCAACCAGTGGTAATTATGTACNTGTGAATGCTATTGCNTACATTCAAGATCNTA
ATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTGCATCGTTAAGAG
ATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATGGTCGTGGTGTTG
GTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGATTTTCCATGATA
TTTCAAGTTATGCTCAATCTCATTATCGTCNTGCTGCACTNTCTTTATCACATCCATTAC
TCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTCAATATCAAGGTG
TTTACTCACCATTGACTTCAGCNTCACCTTTACCAAATGGTTTAAAGATTCAAACTCTAC
AATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATATTTATCAAATTG
ATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAACTATCTTTTCAA
CAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAAAATTATCAAATT
TATCAAGATTAAAATGGAAAACTGTTGATGGTAAAAACTAGGATCATAAATCATCATCAT
CAACTAAAGAAGATTCTTCAAAGGTTTTGTTTTTACTTTT
Length of connected seq. 1350
Full length Seq ID -
Full length Seq. -
Length of full length seq. -