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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE869
Library VH
(Link to library)
Clone ID VHE869
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16438-1
Original site URL
Representative seq. ID VHE869P
(Link to Original site)
Representative DNA sequence 
>VHE869 (VHE869Q) /CSM/VH/VHE8-C/VHE869Q.Seq.d/
ATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAA
TTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATT
AGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAA
ATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAA
AGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTC
TTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGA
TGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGA
ATCAATTGTAATGGGAATGTTTGATAGGTGTTTCAAGGAAGGATCATATAAACAGGCATT
AGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGG
TAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCG
TCATTTCCGTCATAGTGTTTXXXXXXXXXXGGTANTGCATGTGCTGGTACCGGTCAAAGA
GATGCTTTGGAAATTTTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCC
GCTTGGATNTCCATGGCTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCT
GAAACCGCCAGAAAATTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCC
AAGTTTGGTGCTGTATTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATT
CAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTANTGCTGGTTTC
NTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAANTCCAACN
TCTATCATTGGTATCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGC
AGACCATCANTCTTTGNTTATCCACTTGAAACCAAACCATCCNCCACAAGNTCAACCAAT
AAAATTGAAACAGCCATCNTCTCTTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCC
GCTATGAATATGATCAAGATGTNAAAAGAAAGAAAAAGTAGGAGAAAGAAGCCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
yiyt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIK
SLSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFID
EYIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSG
NVNSMLSYCLHICNVSVNNRHFRHSV---

---GXACAGTGQRDALEILKSLTTDSVGYVKQAAWXSMAMVLIQTSKELVPEAETARKLF
ATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIVGXAGFXQFWYWF
PMTHFMGLALXPTSIIGINKNLEMPVFTFKSNCRPSXFXYPLETKPSXTXSTNKIETAIX
SYSRKNKLQSSRSAMNMIKMXKERKSRRKKP
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiyiikisynhgsn*fsf*lpiiig*rsirieiifirkirfmc**ilvrnciifnr*nk
iiisq*tiskt*tciisfiksilqfk*fpkfngicviswffi*cfike*ih*ntfi*iy*
*iy*iknihk*rhcyqstsrincngnv**vfqgrii*tgirycy*skkiryn*ksnftiw
*ck*yalllsshl*cfskqssfps*c---

---GXACAGTGQRDALEILKSLTTDSVGYVKQAAWXSMAMVLIQTSKELVPEAETARKLF
ATCISDKREDSMSKFGAVLAFGVIDAGGRNSTIQLHSPSGHKNMNAIVGXAGFXQFWYWF
PMTHFMGLALXPTSIIGINKNLEMPVFTFKSNCRPSXFXYPLETKPSXTXSTNKIETAIX
SYSRKNKLQSSRSAMNMIKMXKERKSRRKKP

Frame B:
yiyt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIK
SLSVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFID
EYIKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSG
NVNSMLSYCLHICNVSVNNRHFRHSV---

---vxhvlvpvkemlwkf*nhsppivlvtlnkplgxpwlwy*fkpvkswyqrlkppenys
plvsvinvriqcpslvly*hlvslmpvvetlpfnyihqvvtri*mlslvxlvsfnfgigs
q*ltlwa*r*xqxlslvstktwkcqfslsnpiadhxslxihlkpnhppqxqpiklkqpss
ltverinfkvlvpl*i*srcxkkekvgersq

Frame C:
iyihn*nfiqsw*qliqflityhywmkin*n*nhih*kn*ihvlmnfgqklhhlqsik*n
hyqsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlvlylmfyqrvntlkhfyinllm
niln*ehpqiktllsihisnql*wecligvsrkdhinrh*vlllkqed*i*lkkqfhnlv
m*ivcslivftfvmfq*tivisvivf---

---xcmcwyrskrcfgnfkithhr*cwlr*tsrldxhgygidsnq*rvgtrg*nrqkiir
hlyq**t*gfnvqvwccisiwch*crw*klyhsitftkwsqeyecyrwxcwfxsilvlvp
ndslyglsvxsnxyhwyqqklgnasfhfqiqlqtixlxlst*nqtixhkxnq*n*nshxl
lq*ke*tskfsfryeydqdvkrkkk*ekea
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE869 (VHE869Q) /CSM/VH/VHE8-C/VHE869Q.Seq.d/                       2357   0.0
VHQ273 (VHQ273Q) /CSM/VH/VHQ2-D/VHQ273Q.Seq.d/                       1221   0.0
VHM583 (VHM583Q) /CSM/VH/VHM5-D/VHM583Q.Seq.d/                       1221   0.0
VHJ820 (VHJ820Q) /CSM/VH/VHJ8-A/VHJ820Q.Seq.d/                       1221   0.0
VHJ394 (VHJ394Q) /CSM/VH/VHJ3-D/VHJ394Q.Seq.d/                       1221   0.0
VHG363 (VHG363Q) /CSM/VH/VHG3-C/VHG363Q.Seq.d/                       1221   0.0
SHE234 (SHE234Q) /CSM/SH/SHE2-B/SHE234Q.Seq.d/                       1221   0.0
AHO811 (AHO811Q) /CSM/AH/AHO8-A/AHO811Q.Seq.d/                       1221   0.0
AHN525 (AHN525Q) /CSM/AH/AHN5-B/AHN525Q.Seq.d/                       1221   0.0
AHL636 (AHL636Q) /CSM/AH/AHL6-B/AHL636Q.Seq.d/                       1221   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR341305|CR341305.1 mte1-73F15FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    40   0.009  2
EC826598|EC826598.1 SME00003256 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.042  1
EC821651|EC821651.1 SME00005388 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.042  1
EC820433|EC820433.1 SME00003343 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.042  1
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    32   0.044  14
AC007630|AC007630.4 Homo sapiens chromosome 20 clone P1-7739, complete sequence.    42   0.071  5
EG552229|EG552229.1 MM04L04_RP Sugar Beet germination cDNA library Beta vulgaris cDNA clone MM04_L04 3', mRNA sequence.    50   0.17   1
BZ065603|BZ065603.1 lix22d03.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46   0.19   2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   0.22   15
AM444950|AM444950.2 Vitis vinifera contig VV78X011646.6, whole genome shotgun sequence.    40   0.43   2
dna update 2007. 9. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX571973_4(BX571973|pid:none) Zebrafish DNA sequence from clone ...   185   3e-45
AM270075_3(AM270075|pid:none) Aspergillus niger contig An04c0140...   185   3e-45
BC105883_1(BC105883|pid:none) Rattus norvegicus proteasome (pros...   183   1e-44
BC014013_1(BC014013|pid:none) Homo sapiens proteasome (prosome, ...   183   1e-44
(Q3TXS7) RecName: Full=26S proteasome non-ATPase regulatory subu...   183   1e-44
D44466_1(D44466|pid:none) Homo sapiens mRNA for proteasome subun...   183   1e-44
BC047897_1(BC047897|pid:none) Homo sapiens proteasome (prosome, ...   183   1e-44
(Q8IV79) RecName: Full=26S proteasome non-ATPase regulatory subu...   183   1e-44
BC001053_1(BC001053|pid:none) Homo sapiens proteasome (prosome, ...   183   1e-44
BC151445_1(BC151445|pid:none) Bos taurus proteasome (prosome, ma...   183   1e-44
protein update 2009. 7. 2
PSORT 

 psg: 0.92  gvh: 0.35  alm: 0.41  top: 0.17  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VHE869 is nuc
5' end seq. ID VHE869F
5' end seq. 
>VHE869F.Seq
ATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAA
TTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATT
AGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAA
ATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAA
AGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTC
TTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGA
TGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGA
ATCAATTGTAATGGGAATGTTTGATAGGTGTTTCAAGGAAGGATCATATAAACAGGCATT
AGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGG
TAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCG
TCATTTCCGTCATAGTGTTTNNNNNNNNNN
Length of 5' end seq. 630
3' end seq. ID VHE869Z
3' end seq. 
>VHE869Z.Seq
NNNNNNNNNNGGTANTGCATGTGCTGGTACCGGTCAAAGAGATGCTTTGGAAATTTTAAA
ATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCCGCTTGGATNTCCATGGCTAT
GGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCTGAAACCGCCAGAAAATTATT
CGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCCAAGTTTGGTGCTGTATTAGC
ATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATTCAATTACATTCACCAAGTGG
TCACAAGAATATGAATGCTATCGTTGGTANTGCTGGTTTCNTTCAATTTTGGTATTGGTT
CCCAATGACTCACTTTATGGGCTTAGCGTTAANTCCAACNTCTATCATTGGTATCAACAA
AAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCANTCTTTGNTTA
TCCACTTGAAACCAAACCATCCNCCACAAGNTCAACCAATAAAATTGAAACAGCCATCNT
CTCTTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATGATCAAGAT
GTNAAAAGAAAGAAAAAGTAGGAGAAAGAAGCCAA
Length of 3' end seq. 635
Connected seq. ID VHE869P
Connected seq. 
>VHE869P.Seq
ATATATATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAA
TTACCTATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATT
AGATTCATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAA
ATCATTATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAA
AGTATATTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTC
TTTATTTAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGA
TGAATATATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGA
ATCAATTGTAATGGGAATGTTTGATAGGTGTTTCAAGGAAGGATCATATAAACAGGCATT
AGGTATTGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGG
TAATGTAAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCG
TCATTTCCGTCATAGTGTTT----------GGTANTGCATGTGCTGGTACCGGTCAAAGA
GATGCTTTGGAAATTTTAAAATCACTCACCACCGATAGTGTTGGTTACGTTAAACAAGCC
GCTTGGATNTCCATGGCTATGGTATTGATTCAAACCAGTAAAGAGTTGGTACCAGAGGCT
GAAACCGCCAGAAAATTATTCGCCACTTGTATCAGTGATAAACGTGAGGATTCAATGTCC
AAGTTTGGTGCTGTATTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTCTACCATT
CAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTANTGCTGGTTTC
NTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAANTCCAACN
TCTATCATTGGTATCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGC
AGACCATCANTCTTTGNTTATCCACTTGAAACCAAACCATCCNCCACAAGNTCAACCAAT
AAAATTGAAACAGCCATCNTCTCTTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCC
GCTATGAATATGATCAAGATGTNAAAAGAAAGAAAAAGTAGGAGAAAGAAGCCAA
Length of connected seq. 1245
Full length Seq ID -
Full length Seq. -
Length of full length seq. -