VHE867
Library VH
(Link to library)
Clone ID VHE867
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14789-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHE867 (VHE867Q) /CSM/VH/VHE8-C/VHE867Q.Seq.d/
AAACATTTGAACAACAATAAATTAAAAAATGGCACCAACATTATTAACTGAAGAACAAAG
AAGAGAATTAATCCCAAAAGATTGGGAAATGGTTGTTGGTAGAGATGCAATCAAAAAAAC
TTTTACATTTAAAGATTTTAATCAAGCTTTCAGTTTTATGACTAGAGTTGCATTAGTTGC
TGAACAAATGAACCATCATCCAGAATGGTTCAATGTTTATAATAGAGTTGAAATTACACT
CGCAACTCATGATTGTTCTGGTTTATCTGTTAATGATACTAAAATGGCAGATATTATGAA
TCAATTTTTTAATCAATTACATCAATAAAATAAATTTAATATTTAATAGATACATAACCA
ATCAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
ni*ttin*KMAPTLLTEEQRRELIPKDWEMVVGRDAIKKTFTFKDFNQAFSFMTRVALVA
EQMNHHPEWFNVYNRVEITLATHDCSGLSVNDTKMADIMNQFFNQLHQ*nkfni**ihnq
skk---


Translated Amino Acid sequence (All Frames)
Frame A:
khlnnnklkngtniin*rtkkrinpkrlgngcw*rcnqknfyi*rf*ssfqfyd*scisc
*tnepssrmvqcl**s*nytrns*lfwfic**y*ngryyesif*sitsik*i*ylidt*p
ikkk---


Frame B:
ni*ttin*KMAPTLLTEEQRRELIPKDWEMVVGRDAIKKTFTFKDFNQAFSFMTRVALVA
EQMNHHPEWFNVYNRVEITLATHDCSGLSVNDTKMADIMNQFFNQLHQ*nkfni**ihnq
skk---


Frame C:
tfeqq*ikkwhqhy*lknkeen*sqkigkwllvemqskkllhlkiliklsvl*lelh*ll
nk*tiiqngsmfiielklhsqlmivlvyllmilkwqil*inflinyinkinlifnryitn
qkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE867 (VHE867Q) /CSM/VH/VHE8-C/VHE867Q.Seq.d/ 678 0.0
SSB349 (SSB349Q) /CSM/SS/SSB3-C/SSB349Q.Seq.d/ 40 0.024
FCL-AC11 (FCL-AC11Q) /CSM/FCL/FCL-AC/FCL-AC11Q.Seq.d/ 40 0.024
FCL-AA19 (FCL-AA19Q) /CSM/FCL/FCL-AA/FCL-AA19Q.Seq.d/ 40 0.024
CHQ874 (CHQ874Q) /CSM/CH/CHQ8-D/CHQ874Q.Seq.d/ 38 0.094
VHP661 (VHP661Q) /CSM/VH/VHP6-C/VHP661Q.Seq.d/ 38 0.094
VHK119 (VHK119Q) /CSM/VH/VHK1-A/VHK119Q.Seq.d/ 38 0.094
VHF386 (VHF386Q) /CSM/VH/VHF3-D/VHF386Q.Seq.d/ 38 0.094
SSL664 (SSL664Q) /CSM/SS/SSL6-C/SSL664Q.Seq.d/ 38 0.094

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DY772850|DY772850.1 5TH_new06_D21 Bicyclus anynana wings - 5TH instar larvae Bicyclusanynana cDNA 3', mRNA sequence. 88 2e-13 1
DY771576|DY771576.1 5TH_new02_M23 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence. 88 2e-13 1
DY771205|DY771205.1 5TH_new01_M20 Bicyclus anynana wings - 5TH instar larvae Bicyclus anynana cDNA 3', mRNA sequence. 88 2e-13 1
DY767202|DY767202.1 48H_new15_I08 Bicyclus anynana wings - 48H pupae Bicyclus anynana cDNA 3', mRNA sequence. 88 2e-13 1
DY764654|DY764654.1 CPP_new10_O11 Bicyclus anynana wings - CPP Bicyclus anynana cDNA 3', mRNA sequence. 88 2e-13 1
DY763405|DY763405.1 CPP_new07_A23 Bicyclus anynana wings - CPP Bicyclus anynana cDNA 3', mRNA sequence. 88 2e-13 1
CK984458|CK984458.1 re37f07.y1 Meloidogyne incognita J3 J4 SL1 pGEM Meloidogyne incognita cDNA 5' similar to TR:Q9TZH6 Q9TZH6 T10B11.1 PROTEIN. [1] ;, mRNA sequence. 62 4e-13 2
BA000022|BA000022.2 Synechocystis sp. PCC 6803 DNA, complete genome. 54 1e-12 2
DY769621|DY769621.1 72H_new21_C07 Bicyclus anynana wings - 72H pupae Bicyclus anynana cDNA 3', mRNA sequence. 84 3e-12 1
CF801237|CF801237.1 rj59e10.y1 Meloidogyne chitwoodi female SL1 pGEM Meloidogyne chitwoodi cDNA 5' similar to TR:Q9TZH6 Q9TZH6 T10B11.1 PROTEIN. [1] ;, mRNA sequence. 80 5e-11 1
dna update 2007. 9. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RY8) RecName: Full=Pterin-4-alpha-carbinolamine dehydratase;... 206 3e-52
AF098993_7(AF098993|pid:none) Caenorhabditis elegans cosmid T10B... 119 3e-26
BT079422_1(BT079422|pid:none) Esox lucius clone eluc-evq-536-222... 118 6e-26
BT075134_1(BT075134|pid:none) Osmerus mordax clone omor-eva-006-... 116 2e-25
BT056678_1(BT056678|pid:none) Salmo salar clone ssal-rgb2-599-16... 116 2e-25
DQ363469_1(DQ363469|pid:none) Ictalurus punctatus isolate SPPB09... 115 4e-25
AF473825_1(AF473825|pid:none) Danio rerio dimerization cofactor ... 114 1e-24
BT081592_1(BT081592|pid:none) Rana catesbeiana clone rcat-evr-51... 112 3e-24
(Q9CZL5) RecName: Full=Pterin-4-alpha-carbinolamine dehydratase ... 112 4e-24
BC103434_1(BC103434|pid:none) Bos taurus pterin-4 alpha-carbinol... 111 7e-24
protein update 2009. 7. 2
PSORT

psg: 0.75 gvh: 0.34 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for VHE867 is cyt

5' end seq. ID VHE867F
5' end seq.
>VHE867F.Seq
AAACATTTGAACAACAATAAATTAAAAAATGGCACCAACATTATTAACTGAAGAACAAAG
AAGAGAATTAATCCCAAAAGATTGGGAAATGGTTGTTGGTAGAGATGCAATCAAAAAAAC
TTTTACATTTAAAGATTTTAATCAAGCTTTCAGTTTTATGACTAGAGTTGCATTAGTTGC
TGAACAAATGAACCATCATCCAGAATGGTTCAATGTTTATAATAGAGTTGAAATTACACT
CGCAACTCATGATTGTTCTGGTTTATCTGTTAATGATACTAAAATGGCAGATATTATGAA
TCAATTTTTTAATCAATTACATCAATAAAATAAATTTAATATTTAATAGATACATAACCA
ATCAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 383
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -