VHE866
Library VH
(Link to library)
Clone ID VHE866
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHE866P
(Link to Original site)
Representative DNA sequence
>VHE866 (VHE866Q) /CSM/VH/VHE8-C/VHE866Q.Seq.d/
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA
GTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAAGCGGGXXXXXXXXXXACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGC
TTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGATCATA
GCGACGCTGCTTTTTGATCNTTCGATGTCGGATCTTCTTATCATTGTGAAGCAGAATTCA
CAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGNTGGGTTTAGACCGTCGTGA
GACAGGTTAGTTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTA
CGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCT
GCCGCTACCATCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAGAAAC
GCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGAC
CACTTTCAACTTTAAACCATATGATTAATCGCTGTTACNCTGCAGTTTCNTTCCGGTTAN
TGTGGTGGGTGGATAAATTATAATTTATATCNTCGTTCCGCTCAACTCTTCGATTGTAGA
C
sequence update 2002.10.25
Translated Amino Acid sequence
camknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w*
*qifkriyfegrsgegfhnngihlwvsrs*glg*LSLIRLLGHWIESEGGFNTSDFIGRK
GSG---

---TRAYRSFMCLNLKLRGVRKVTTGITGLWQPSDHSDAAF*sfdvgssyhceaeftkcw
ivhpltrnvxwv*tvvrqvsftxllsivcviva*fstrgtvmpdhwsvglfdkivtcryh
pldng*txisqnpf*krkpnalececcr*h*vvgggplstlnhminrcyxavsfrlxwwv
dkl*fissfrstlrl*


Translated Amino Acid sequence (All Frames)
Frame A:
mcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakec
vtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmv
vaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpk
gkr---

---TRAYRSFMCLNLKLRGVRKVTTGITGLWQPSDHSDAAF*sfdvgssyhceaeftkcw
ivhpltrnvxwv*tvvrqvsftxllsivcviva*fstrgtvmpdhwsvglfdkivtcryh
pldng*txisqnpf*krkpnalececcr*h*vvgggplstlnhminrcyxavsfrlxwwv
dkl*fissfrstlrl*

Frame B:
camknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w*
*qifkriyfegrsgegfhnngihlwvsrs*glg*LSLIRLLGHWIESEGGFNTSDFIGRK
GSG---

---pgpidplca*ilslevseklpqg*lacgsqaiiatllfdxsmsdlliivkqnsqsvg
lfth*qgt*xgfrps*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paati
rwimaerx*vrihsrnanqml*svnvvgnirllvgdhfql*ti*liavtlqfxsgxcggw
inynlyxrsaqlfdcr

Frame C:
vq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvc
nnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgs
skyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aer
ea---

---qglsilyvlks*a*rcqksyhrdnwlvaakrs*rrcflixrcriflsl*srihkvld
csptnkerexgldrretg*fyxtvvnclrnssmi*yernchagslvcrfi*qnsdlplps
vg*wlnayksesiletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllxcsfxpvxvvgg
*iiiyixvplnssivd

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHE866 (VHE866Q) /CSM/VH/VHE8-C/VHE866Q.Seq.d/ 2155 0.0
VHE787 (VHE787Q) /CSM/VH/VHE7-D/VHE787Q.Seq.d/ 1098 0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/ 1090 0.0
VHO493 (VHO493Q) /CSM/VH/VHO4-D/VHO493Q.Seq.d/ 1090 0.0
VHN816 (VHN816Q) /CSM/VH/VHN8-A/VHN816Q.Seq.d/ 1090 0.0
VHM596 (VHM596Q) /CSM/VH/VHM5-D/VHM596Q.Seq.d/ 1090 0.0
VHM406 (VHM406Q) /CSM/VH/VHM4-A/VHM406Q.Seq.d/ 1090 0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/ 1090 0.0
VHL212 (VHL212Q) /CSM/VH/VHL2-A/VHL212Q.Seq.d/ 1090 0.0
VHL154 (VHL154Q) /CSM/VH/VHL1-C/VHL154Q.Seq.d/ 1090 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1084 0.0 1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 1076 0.0 1
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 1045 0.0 2
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 815 0.0 6
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence. 379 0.0 5
DQ340388|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 353 0.0 7
DQ273803|DQ273803.1 Rozella allomycis isolate AFTOL-ID 297 28S ribosomal RNA gene, partial sequence. 343 e-171 8
AJ864475|AJ864475.1 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1. 303 e-168 8
AF289037|AF289037.1 Guillardia theta 28S ribosomal RNA gene, complete sequence. 311 e-168 8
DQ273838|DQ273838.1 Podochytrium dentatum isolate AFTOL-ID 1539 28S ribosomal RNA gene, partial sequence. 287 e-167 9
dna update 2007. 9. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 131 5e-29
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 60 8e-14
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence... 79 2e-13
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 77 9e-13
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo... 72 5e-11
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ... 65 3e-09
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704... 62 3e-08
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p... 59 2e-07
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo... 45 3e-05
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 47 0.002
protein update 2009. 7. 2
PSORT

psg: 0.76 gvh: 0.58 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHE866 is cyt

5' end seq. ID VHE866F
5' end seq.
>VHE866F.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA
GTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAAGCGGGNNNNNNNNNN
Length of 5' end seq. 560
3' end seq. ID VHE866Z
3' end seq.
>VHE866Z.Seq
NNNNNNNNNNACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCTTAGAGGTGT
CAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGATCATAGCGACGCTGC
TTTTTGATCNTTCGATGTCGGATCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTG
GATTGTTCACCCACTAACAAGGAACGTGAGNTGGGTTTAGACCGTCGTGAGACAGGTTAG
TTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAAC
TGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCA
TCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAGAAACGCAAACCAAA
TGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAAC
TTTAAACCATATGATTAATCGCTGTTACNCTGCAGTTTCNTTCCGGTTANTGTGGTGGGT
GGATAAATTATAATTTATATCNTCGTTCCGCTCAACTCTTCGATTGTAGAC
Length of 3' end seq. 591
Connected seq. ID VHE866P
Connected seq.
>VHE866P.Seq
ATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATG
TGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGG
TGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGT
GTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGG
TCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGT
AACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTA
GTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAA
TGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTT
ACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAA
GGGAAGCGGG----------ACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGC
TTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGATCATA
GCGACGCTGCTTTTTGATCNTTCGATGTCGGATCTTCTTATCATTGTGAAGCAGAATTCA
CAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGNTGGGTTTAGACCGTCGTGA
GACAGGTTAGTTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTA
CGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCT
GCCGCTACCATCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAGAAAC
GCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGAC
CACTTTCAACTTTAAACCATATGATTAATCGCTGTTACNCTGCAGTTTCNTTCCGGTTAN
TGTGGTGGGTGGATAAATTATAATTTATATCNTCGTTCCGCTCAACTCTTCGATTGTAGA
C
Length of connected seq. 1131
Full length Seq ID -
Full length Seq. -
Length of full length seq. -