>VHE863 (VHE863Q) /CSM/VH/VHE8-C/VHE863Q.Seq.d/
XXXXXXXXXXCACCACCACCAACACTCAACAATCACCAAATAGCGAATCATCAGAATATA
AATTCACTGATCCATTCATTTATAAACTTAATCACATTAATAGTTCAAAAGTACTTTTCC
NTCAAATTAAATCTGGTTCTGATCTTCGTGTTACAATCGACACCCACTCCAAGAGTAAAT
TGGTTAGCGGAACTGGTCAACATCAATACGACAATATCATCAAATTTATCGATTCCATTA
AAATTCATAAAAACTCATCATGGTAATAACACCTATCAAATTCCAGATAGCAATCTTTTC
ATGACTGAATCAATTATCACTCGTAAGGTCTTAATGTATAGATCCGATGATAATAGCCTT
CAATTCCATGTTAATGAGGACATTGCAACTCGTTACACAACTTCAACCCCCGAAGTTAAC
AGAGAATCCACTACCGTATTCTGTANTTATCCTGCCCTTTACGATATNTTCAAATCAAAG
AATTGGACCGTCGATCAAGCT

---PPPTLNNHQIANHQNINSLIHSFINLITLIVQKYFSXKLNLVLIFVLQSTPTPRVNW
LAELVNINTTISSNLSIPLKFIKTHHGNNTYQIPDSNLFMTESIITRKVLMYRSDDNSLQ
FHVNEDIATRYTTSTPEVNRESTTVFCXYPALYDXFKSKNWTVDQA

Frame A:
---tttntqqspnsesseykftdpfiyklnhinsskvlfxqiksgsdlrvtidthskskl
vsgtgqhqydniikfidsikihknssw**hlsnsr*qsfhd*inyhs*glnv*ir***ps
ipc**ghcnslhnfnprs*qrihyrilxlscplryxqikeldrrss


Frame B:
---PPPTLNNHQIANHQNINSLIHSFINLITLIVQKYFSXKLNLVLIFVLQSTPTPRVNW
LAELVNINTTISSNLSIPLKFIKTHHGNNTYQIPDSNLFMTESIITRKVLMYRSDDNSLQ
FHVNEDIATRYTTSTPEVNRESTTVFCXYPALYDXFKSKNWTVDQA


Frame C:
---hhqhstitk*riiri*ih*sihl*t*sh**fkstfpsn*iwf*sscynrhplqe*ig
*rnwstsirqyhqiyrfh*ns*klimvitpikfqiaifs*lnqlslvrs*cidpmiiafn
smlmrtlqlvtqlqppkltenplpysvxilpftixsnqrigpsik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE863 (VHE863Q) /CSM/VH/VHE8-C/VHE863Q.Seq.d/                        955   0.0
AFJ446 (AFJ446Q) /CSM/AF/AFJ4-B/AFJ446Q.Seq.d/                        892   0.0
VFL306 (VFL306Q) /CSM/VF/VFL3-A/VFL306Q.Seq.d/                        888   0.0
VFH115 (VFH115Q) /CSM/VF/VFH1-A/VFH115Q.Seq.d/                        628   e-179
VHQ236 (VHQ236Q) /CSM/VH/VHQ2-B/VHQ236Q.Seq.d/                         34   1.9
VHP336 (VHP336Q) /CSM/VH/VHP3-B/VHP336Q.Seq.d/                         34   1.9
VHN619 (VHN619Q) /CSM/VH/VHN6-A/VHN619Q.Seq.d/                         34   1.9
VHL873 (VHL873Q) /CSM/VH/VHL8-D/VHL873Q.Seq.d/                         34   1.9
VHL687 (VHL687Q) /CSM/VH/VHL6-D/VHL687Q.Seq.d/                         34   1.9
VHJ744 (VHJ744Q) /CSM/VH/VHJ7-B/VHJ744Q.Seq.d/                         34   1.9

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CU138562|CU138562.3 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH242-229C7.    46   1.0    1
EK355181|EK355181.1 1095468500447 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005833329 3', genomic survey sequence.    46   1.0    1
EJ702269|EJ702269.1 1092956039925 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001806990 5', genomic survey sequence.    42   1.5    2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   1.9    2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   1.9    2
AF067198|AF067198.1 Dictyostelium discoideum clone 9.10 Tdd-3 and RED repetitive elements, partial sequence.    32   2.4    2
Z36534|Z36534.1 D.discoideum (Ax3-K) ponA gene.                    32   2.5    2
EK415122|EK415122.1 1095506197585 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005889199 5', genomic survey sequence.    44   4.0    1
EK002298|EK002298.1 1093025626404 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002901429 5', genomic survey sequence.    44   4.0    1
EJ846125|EJ846125.1 1093017856322 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002901429 3', genomic survey sequence.    44   4.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q48) RecName: Full=Putative uncharacterized protein DDB_G028...   162   2e-73
(Q5UPC8) RecName: Full=Uncharacterized protein L54;  &AY653733_5...    35   1.0
CP000077_1690(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    34   2.2
AK294058_1(AK294058|pid:none) Homo sapiens cDNA FLJ59618 complet...    33   2.9
AB169397_1(AB169397|pid:none) Macaca fascicularis testis cDNA, c...    33   2.9
AB209236_1(AB209236|pid:none) Homo sapiens mRNA for exosome comp...    33   2.9
(Q01780) RecName: Full=Exosome component 10; AltName: Full=Polym...    33   2.9
CP000302_382(CP000302|pid:none) Shewanella denitrificans OS217, ...    33   2.9
AB308463_2(AB308463|pid:none) Aeluroscalabotes felinus mitochond...    33   3.8
BC151674_1(BC151674|pid:none) Bos taurus exosome component 10, m...    33   4.9

 psg: 0.91  gvh: 0.63  alm: 0.37  top: 0.57  tms: 0.00  mit: 0.41  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 24.0 %: extracellular, including cell wall
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHE863 is nuc

>VHE863Z.Seq
NNNNNNNNNNCACCACCACCAACACTCAACAATCACCAAATAGCGAATCATCAGAATATA
AATTCACTGATCCATTCATTTATAAACTTAATCACATTAATAGTTCAAAAGTACTTTTCC
NTCAAATTAAATCTGGTTCTGATCTTCGTGTTACAATCGACACCCACTCCAAGAGTAAAT
TGGTTAGCGGAACTGGTCAACATCAATACGACAATATCATCAAATTTATCGATTCCATTA
AAATTCATAAAAACTCATCATGGTAATAACACCTATCAAATTCCAGATAGCAATCTTTTC
ATGACTGAATCAATTATCACTCGTAAGGTCTTAATGTATAGATCCGATGATAATAGCCTT
CAATTCCATGTTAATGAGGACATTGCAACTCGTTACACAACTTCAACCCCCGAAGTTAAC
AGAGAATCCACTACCGTATTCTGTANTTATCCTGCCCTTTACGATATNTTCAAATCAAAG
AATTGGACCGTCGATCAAGCT