>VHE843 (VHE843Q) /CSM/VH/VHE8-B/VHE843Q.Seq.d/
AAAATCTAATTAACAGCTTTTTTTTTAACACCTTTTGTTATATAATAAATATTCATTGTA
TATAATAACTTTTTTTTTGTTTATTTAATAACAATTTCAAAAAAAAAAAAAAAAAAAAAA
AAAANCNTTTTTTTTTTTAAANNNCCNACCNTTNAAAAAAAAAXXXXXXXXXX

ki*ltaffltpfvi**IFIVYNNFFFVYLITISKKKKKKKKXXFFFKXPTXXKK---

Frame A:
ki*ltaffltpfvi**IFIVYNNFFFVYLITISKKKKKKKKXXFFFKXPTXXKK---


Frame B:
ksn*qlff*hlllynkyslyiitfflfi**qfqkkkkkkkkxffflxxxpxkk---


Frame C:
nlinsfffntfcyiinihci**lffclfnnnfkkkkkkkkxxfff*xxxxxkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI448 (VSI448Q) /CSM/VS/VSI4-B/VSI448Q.Seq.d/                         90   1e-17
VHE843 (VHE843Q) /CSM/VH/VHE8-B/VHE843Q.Seq.d/                         90   1e-17
FC-AK24 (FC-AK24Q) /CSM/FC/FC-AK/FC-AK24Q.Seq.d/                       90   1e-17
SSA681 (SSA681Q) /CSM/SS/SSA6-D/SSA681Q.Seq.d/                         86   2e-16
VSD371 (VSD371Q) /CSM/VS/VSD3-C/VSD371Q.Seq.d/                         80   1e-14
VSI458 (VSI458Q) /CSM/VS/VSI4-C/VSI458Q.Seq.d/                         56   2e-07
VSD370 (VSD370Q) /CSM/VS/VSD3-C/VSD370Q.Seq.d/                         40   0.010
SSL511 (SSL511Q) /CSM/SS/SSL5-A/SSL511Q.Seq.d/                         32   2.5
SSE150 (SSE150Q) /CSM/SS/SSE1-C/SSE150Q.Seq.d/                         32   2.5
SSC778 (SSC778Q) /CSM/SS/SSC7-D/SSC778Q.Seq.d/                         32   2.5

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB038152|AB038152.1 Dictyostelium discoideum Dd4E-BP mRNA for 4E-binding protein homolog, complete cds.    86   2e-19  2
CP000331|CP000331.1 Drosophila melanogaster genomic scaffold 211000022279535.    54   0.001  1
AC125120|AC125120.4 Mus musculus BAC clone RP24-267M16 from chromosome 1, complete sequence.    32   0.18   2
AC126798|AC126798.3 Mus musculus BAC clone RP24-229N7 from chromosome 1, complete sequence.    32   0.18   2
AC100638|AC100638.1 Mus musculus clone RP23-162B9, LOW-PASS SEQUENCE SAMPLING.    32   0.19   2
AC198823|AC198823.2 Nomascus leucogenys leucogenys clone CH271-148K17, WORKING DRAFT SEQUENCE, 9 ordered pieces.    46   0.32   1
AC193710|AC193710.2 Nomascus leucogenys leucogenys clone CH271-332I6, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46   0.32   1
AC172197|AC172197.2 Bos taurus clone CH240-97P22, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    46   0.32   1
AC095639|AC095639.6 Rattus norvegicus clone CH230-8K8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   1.3    1
AF277372|AF277372.1 Homo sapiens chromosome 8 clone RP11-766A10 map 8q13, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    44   1.3    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 103,462,617

 psg: 0.96  gvh: 0.27  alm: 0.32  top: 1.07  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.32  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for VHE843 is nuc

>VHE843F.Seq
AAAATCTAATTAACAGCTTTTTTTTTAACACCTTTTGTTATATAATAAATATTCATTGTA
TATAATAACTTTTTTTTTGTTTATTTAATAACAATTTCAAAAAAAAAAAAAAAAAAAAAA
AAAANCNTTTTTTTTTTTAAANNNCCNACCNTTNAAAAAAAAANNNNNNNNNN