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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE841
Library VH
(Link to library)
Clone ID VHE841
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16214-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHE841 (VHE841Q) /CSM/VH/VHE8-B/VHE841Q.Seq.d/
XXXXXXXXXXCAATAAAATTAAATGGAAAGAAAATTATACATGTTGTGANTCTTGTTTTT
CAAAAGGTTTTAGTGAAAAATCAAAATATTGCCCAATTTGTAGTCATTCAATAAAAGATG
AAGGAGAAGAAGAAGATTCTATAACTACTTGCCAATATTGTCATAAATCAGTTCACGATC
NTTGCGATCAAAATATTATAGATAACNTTGAAAATGAGCNTTTCATTTATAAATGTCCNA
ATTGTATTAGTGACNAGCNAATAAAACCNAGTAGGAATAATTGGTGTTGTTGAAGAAAAG
ACTCCAAAGAAATCATTAGGTAAAAGAAAAAAGAAAGT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---NKIKWKENYTCCXSCFSKGFSEKSKYCPICSHSIKDEGEEEDSITTCQYCHKSVHDX
CDQNIIDNXENEXFIYKCPNCISDXXIKPSRNNWCC*rkdskeiir*kkkes
Translated Amino Acid sequence (All Frames) 
Frame A:
---NKIKWKENYTCCXSCFSKGFSEKSKYCPICSHSIKDEGEEEDSITTCQYCHKSVHDX
CDQNIIDNXENEXFIYKCPNCISDXXIKPSRNNWCC*rkdskeiir*kkkes


Frame B:
---iklngkkiihvvxlvfqkvlvknqniaqfvviq*kmkekkkil*llanivinqftix
aikil*itlkmsxsfinvxivlvtsx*nxvgiigvveektpkkslgkrkkk


Frame C:
---*n*merklyml*xlffkrf**kikilpnl*sfnkr*rrrrrfynylpils*issrsl
rskyyr*x*k*afhl*msxly**xanktx*e*lvllkkrlqrnh*vkekrk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE841 (VHE841Q) /CSM/VH/VHE8-B/VHE841Q.Seq.d/                        603   e-172
CHL662 (CHL662Q) /CSM/CH/CHL6-C/CHL662Q.Seq.d/                        585   e-166
CHJ792 (CHJ792Q) /CSM/CH/CHJ7-D/CHJ792Q.Seq.d/                        585   e-166
AHQ609 (AHQ609Q) /CSM/AH/AHQ6-A/AHQ609Q.Seq.d/                        585   e-166
AHF838 (AHF838Q) /CSM/AH/AHF8-B/AHF838Q.Seq.d/                        585   e-166
AHG417 (AHG417Q) /CSM/AH/AHG4-A/AHG417Q.Seq.d/                        444   e-124
AHA427 (AHA427Q) /CSM/AH/AHA4-B/AHA427Q.Seq.d/                        438   e-122
VHP759 (VHP759Q) /CSM/VH/VHP7-C/VHP759Q.Seq.d/                        416   e-116
SHA214 (SHA214Q) /CSM/SH/SHA2-A/SHA214Q.Seq.d/                        186   1e-46
VHB875 (VHB875Q) /CSM/VH/VHB8-D/VHB875Q.Seq.d/                        174   5e-43
own update 2003.10.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BB971779|BB971779.1 Plasmodium berghei strain ANKA cDNA clone:OK001463, ookinete 5' EST.    48   2e-04  2
AC128950|AC128950.3 Rattus norvegicus clone CH230-512N7, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   0.040  2
AC148761|AC148761.1 Medicago truncatula chromosome 2 clone mth2-19h23, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    50   0.042  1
M97517|M97517.1 Deer mouse (L1Pm62) gene.                          50   0.042  1
AC098719|AC098719.3 Mus musculus clone RP23-2M3, complete sequence.    44   0.047  2
DC231645|DC231645.1 Plasmodium berghei strain ANKA cDNA clone:SG022534, salivary grand sporozoite 5'-EST.    48   0.17   1
DC225984|DC225984.1 Plasmodium berghei strain ANKA cDNA clone:SG004351, salivary grand sporozoite 5'-EST.    48   0.17   1
DC225924|DC225924.1 Plasmodium berghei strain ANKA cDNA clone:SG004163, salivary grand sporozoite 5'-EST.    48   0.17   1
BB978439|BB978439.1 Plasmodium berghei strain ANKA cDNA clone:OK008478, ookinete 5' EST.    48   0.17   1
BB976277|BB976277.1 Plasmodium berghei strain ANKA cDNA clone:OK006149, ookinete 5' EST.    48   0.17   1
dna update 2007. 9. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599_3948(AE013599|pid:none) Drosophila melanogaster chromos...    52   9e-06
AK229897_1(AK229897|pid:none) Arabidopsis thaliana mRNA for hypo...    45   6e-04
AC013483_36(AC013483|pid:none) Arabidopsis thaliana chromosome I...    45   6e-04
AM910993_192(AM910993|pid:none) Plasmodium knowlesi strain H chr...    44   0.001
AL844505_292(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.004
CR382401_38(CR382401|pid:none) Plasmodium falciparum chromosome ...    43   0.004
AK102102_1(AK102102|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.009
AF186605_1(AF186605|pid:none) Homo sapiens MLL2 protein mRNA, pa...    41   0.012
AB002302_1(AB002302|pid:none) Homo sapiens mRNA for KIAA0304 pro...    41   0.012
(O08550) RecName: Full=Histone-lysine N-methyltransferase MLL4; ...    41   0.012
protein update 2009. 7. 2
PSORT 

 psg: 0.88  gvh: 0.47  alm: 0.61  top: 0.33  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHE841 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE841Z
3' end seq. 
>VHE841Z.Seq
NNNNNNNNNNCAATAAAATTAAATGGAAAGAAAATTATACATGTTGTGANTCTTGTTTTT
CAAAAGGTTTTAGTGAAAAATCAAAATATTGCCCAATTTGTAGTCATTCAATAAAAGATG
AAGGAGAAGAAGAAGATTCTATAACTACTTGCCAATATTGTCATAAATCAGTTCACGATC
NTTGCGATCAAAATATTATAGATAACNTTGAAAATGAGCNTTTCATTTATAAATGTCCNA
ATTGTATTAGTGACNAGCNAATAAAACCNAGTAGGAATAATTGGTGTTGTTGAAGAAAAG
ACTCCAAAGAAATCATTAGGTAAAAGAAAAAAGAAAGT
Length of 3' end seq. 338
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -