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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHE820
Library VH
(Link to library)
Clone ID VHE820
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11294-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHE820 (VHE820Q) /CSM/VH/VHE8-A/VHE820Q.Seq.d/
XXXXXXXXXXAATCGGAACNTATAGAAATAGATAATAATAATAGATAATAATAATAATTA
AAGTNATAGTAAATAATAATAAATAAATAAGTAATTTNAATTATTAANAGTTTTGTAGTA
TAATANATTGTATTTTTAAGTCA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---igtyrnr****IIIIIKVIVNNNK*isnxny*xfcsiixcifks
Translated Amino Acid sequence (All Frames) 
Frame A:
---igtyrnr****IIIIIKVIVNNNK*isnxny*xfcsiixcifks


Frame B:
---sexieidnnnr****lkx**iiink*vixiixsfvv*xivfls


Frame C:
---rnx*k*iiiidnnnn*sxsk***ink*fxllxvl*ynxlyf*v
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE820 (VHE820Q) /CSM/VH/VHE8-A/VHE820Q.Seq.d/                         32   2.0
SSL712 (SSL712Q) /CSM/SS/SSL7-A/SSL712Q.Seq.d/                         32   2.0
SLG210 (SLG210Q) /CSM/SL/SLG2-A/SLG210Q.Seq.d/                         32   2.0
AHI364 (AHI364Q) /CSM/AH/AHI3-C/AHI364Q.Seq.d/                         32   2.0
AHE384 (AHE384Q) /CSM/AH/AHE3-D/AHE384Q.Seq.d/                         32   2.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR324334|CR324334.1 mte1-51O6FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.    42   4.0    1
dna update 2007. 9. 2
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 43,477,305
protein update 2009. 7. 1
PSORT -
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHE820Z
3' end seq. 
>VHE820Z.Seq
NNNNNNNNNNAATCGGAACNTATAGAAATAGATAATAATAATAGATAATAATAATAATTA
AAGTNATAGTAAATAATAATAAATAAATAAGTAATTTNAATTATTAANAGTTTTGTAGTA
TAATANATTGTATTTTTAAGTCA
Length of 3' end seq. 143
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -