>VHE787 (VHE787Q) /CSM/VH/VHE7-D/VHE787Q.Seq.d/
AATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGT
TCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGAC
AATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTG
GGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAA
ATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAA
TATTGGGATAAGACGTCTGACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAA
GACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTG
AATGTGAATTCGAGTGGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTC
AAAAGAATXXXXXXXXXXTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTT
AAGCTTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGAT
CATAGCGACGCTGCTTTTTGATCNTTCGATGTCGGNTCTTCTTATCATTGTGAAGCAGAA
TTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTC
GTGAGACAGGTTAGTTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTT
AGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTG
ACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAG
AAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGG
GGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCNTTCCGG
TTATTGTGGTGGGTGGATAAATTATAATTTATATCCTCGTTCCGCTCAACTCTTCGATTG
TAGACGACTATCAAATGAACTAGGTGCTGTAAGACTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGACTTTTCCAT

slv*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tgg
yhfnslnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslr
qqdgghgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*KLE
CEFEWELSLVQILMVVANIQKN---

---WETRAYRSFMCLNLKLRGVRKVTTGITGLWQPSDHSDAAF*sfdvgssyhceaeftk
cwivhpltrnvswv*tvvrqvsftxllsivcviva*fstrgtvmpdhwsvglfdkivtcr
yhpldng*txisqnpf*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllw
wvdkl*fissfrstlrl*ttik*trccktse*rsvtrg*glfh

Frame A:
nrlsnlgigakd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrnals*fsnserv
giilihligf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsdih**ipqkvlvh*
dsrtvamevgir*gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrsl
nvnssgscl*crs*w**qifkr---

---WETRAYRSFMCLNLKLRGVRKVTTGITGLWQPSDHSDAAF*sfdvgssyhceaeftk
cwivhpltrnvswv*tvvrqvsftxllsivcviva*fstrgtvmpdhwsvglfdkivtcr
yhpldng*txisqnpf*krkpnalececcr*h*vvgggplstlnhminrcytavsfrllw
wvdkl*fissfrstlrl*ttik*trccktse*rsvtrg*glfh

Frame B:
iacltwv*grktnrtt**lvpsevslriagavf*fhlvktmissfggvmlsadsqtlngw
vsf*ft*ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fik
tagrwpwksvsakecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*
m*irvgvvfsadldgsskyske---

---gkpgpidplca*ilslevseklpqg*lacgsqaiiatllfdxsmsxlliivkqnsqs
vglfth*qgt*agfrps*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paa
tirwimaerx*vrihsrnanqml*svnvvgnirllvgdhfql*ti*liavtlqfxsgycg
gwinynlyprsaqlfdcrrlsnelgavrlpssvqlrgvedfs

Frame C:
slv*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*csqlilkl*tgg
yhfnslnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslr
qqdgghgsryplrsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*KLE
CEFEWELSLVQILMVVANIQKN---

---gnqglsilyvlks*a*rcqksyhrdnwlvaakrs*rrcflixrcrxflsl*srihkv
ldcsptnkerelgldrretg*fyxtvvnclrnssmi*yernchagslvcrfi*qnsdlpl
psvg*wlnayksesiletqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsfxpvivv
gg*iiiyilvplnssivddyqmn*vl*dfrvafsyeglrtfp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE787 (VHE787Q) /CSM/VH/VHE7-D/VHE787Q.Seq.d/                       2444   0.0
CHJ111 (CHJ111Q) /CSM/CH/CHJ1-A/CHJ111Q.Seq.d/                       1219   0.0
VHJ433 (VHJ433Q) /CSM/VH/VHJ4-B/VHJ433Q.Seq.d/                       1217   0.0
VHI522 (VHI522Q) /CSM/VH/VHI5-A/VHI522Q.Seq.d/                       1215   0.0
SFE396 (SFE396Q) /CSM/SF/SFE3-D/SFE396Q.Seq.d/                       1215   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1207   0.0
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/                       1207   0.0
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/                       1207   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1207   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1207   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1150   0.0    2
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.  1134   0.0    2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1096   0.0    2
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   678   0.0    8
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence.   387   0.0    10
DQ340388|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   361   0.0    9
AJ864475|AJ864475.1 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene,  ITS2 and partial 28S rRNA, clone V5-1.   311   0.0    8
DQ273803|DQ273803.1 Rozella allomycis isolate AFTOL-ID 297 28S ribosomal RNA gene, partial sequence.   351   0.0    7
AF289037|AF289037.1 Guillardia theta 28S ribosomal RNA gene, complete sequence.   319   0.0    8
DQ273838|DQ273838.1 Podochytrium dentatum isolate AFTOL-ID 1539 28S ribosomal RNA gene, partial sequence.   295   0.0    8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   134   9e-30
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   9e-14
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    80   2e-13
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    78   6e-13
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    72   3e-11
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    66   3e-09
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    62   6e-08
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    61   1e-07
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.003
AY810980_1(AY810980|pid:none) Schistosoma japonicum clone SJCHGC...    45   0.007

 psg: 0.75  gvh: 0.44  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for VHE787 is cyt

>VHE787F.Seq
AATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGT
TCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGAC
AATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTG
GGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAA
ATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAA
TATTGGGATAAGACGTCTGACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAA
GACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTG
AATGTGAATTCGAGTGGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTC
AAAAGAATNNNNNNNNNN

>VHE787Z.Seq
NNNNNNNNNNTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCTTAG
AGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGATCATAGCGA
CGCTGCTTTTTGATCNTTCGATGTCGGNTCTTCTTATCATTGTGAAGCAGAATTCACAAA
GTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACA
GGTTAGTTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAG
AGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCG
CTACCATCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAGAAACGCAA
ACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACT
TTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCNTTCCGGTTATTGTG
GTGGGTGGATAAATTATAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGAC
TATCAAATGAACTAGGTGCTGTAAGACTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGG
ACTTTTCCAT

>VHE787P.Seq
AATCGCTTGTCTAACTTGGGTATAGGGGCGAAAGACTAATCGAACAACCTAGTAGCTGGT
TCCTTCCGAAGTTTCCCTCAGGATAGCTGGAGCAGTATTCTAGTTCCATCTTGTAAAGAC
AATGATTAGCAGTTTCGGGGGCGTAATGCTCTCAGCTGATTCTCAAACTCTGAACGGGTG
GGTATCATTTTAATTCACTTAATTGGATTTTAAAATTAAATTGCACATGTGCAATGAAAA
ATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAA
TATTGGGATAAGACGTCTGACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAA
GACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCT
GCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCG
TTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTG
AATGTGAATTCGAGTGGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTC
AAAAGAAT----------TGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTT
AAGCTTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGAT
CATAGCGACGCTGCTTTTTGATCNTTCGATGTCGGNTCTTCTTATCATTGTGAAGCAGAA
TTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTC
GTGAGACAGGTTAGTTTTACCNTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTT
AGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTG
ACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCNTATAAGTCAGAATCCATTCTAG
AAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGG
GGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCNTTCCGG
TTATTGTGGTGGGTGGATAAATTATAATTTATATCCTCGTTCCGCTCAACTCTTCGATTG
TAGACGACTATCAAATGAACTAGGTGCTGTAAGACTTCCGAGTAGCGTTCAGTTACGAGG
GGTTGAGGACTTTTCCAT